CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem.
Mariana L. NevesMonica ChagoyenJosé María CarazoAlberto D. Pascual-MontanoPublished in: BioNLP (2008)
Keyphrases
- case based reasoning
- sequence alignment
- homo sapiens
- cellular processes
- protein protein interaction networks
- gene prediction
- nucleotide sequences
- biological entities
- regulatory networks
- interaction networks
- genomic sequences
- protein interaction
- dna sequences
- protein function
- protein protein interactions
- gene ontology
- gene expression
- protein sequences
- dna binding
- protein structure
- microarray
- sequence data
- saccharomyces cerevisiae
- gene expression data
- biomedical literature
- biological knowledge
- signaling pathways
- case base
- protein interaction networks
- gene networks
- gene regulatory networks
- named entities
- amino acids
- sequence analysis
- genome scale
- cbr systems
- molecular biology
- experimental conditions
- mass spectrometry
- case retrieval
- cis regulatory
- biological networks
- text mining
- robot soccer
- biological data
- medline abstracts
- alternative splicing
- transcription factor binding sites
- protein structure prediction
- comparative genomics
- drug discovery
- gene function
- biological systems
- protein folding
- gene ontology terms