Oscar P. Kuipers

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 2

Top Topics

Tandem Mass Spectrometry

Graphical User Interface

Top Venues

Nucleic Acids Res.

Publications

Anne de Jong, Oscar P. Kuipers, Jan Kok
FUNAGE-Pro: comprehensive web server for gene set enrichment analysis of prokaryotes. Nucleic Acids Res. 50 (W1) (2022)
Auke J. van Heel, Anne de Jong, Chunxu Song, Jakob H. Viel, Jan Kok, Oscar P. Kuipers
BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Robyn T. Eijlander, Anne de Jong, Antonina O. Krawczyk, Siger Holsappel, Oscar P. Kuipers
. Nucleic Acids Res. 42 (Database-Issue) (2014)
Auke J. van Heel, Anne de Jong, Manuel Montalbán-López, Jan Kok, Oscar P. Kuipers
BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Anne de Jong, Auke J. van Heel, Jan Kok, Oscar P. Kuipers
BAGEL2: mining for bacteriocins in genomic data. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Michel A. Westenberg, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum
SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks. Bioinform. 26 (22) (2010)
Rutger W. W. Brouwer, Sacha A. F. T. van Hijum, Oscar P. Kuipers
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context. Bioinform. 25 (1) (2009)
Evert-Jan Blom, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum
MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data. Bioinform. 25 (4) (2009)
Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons. BMC Bioinform. 9 (2008)
Michel A. Westenberg, Sacha A. F. T. van Hijum, Oscar P. Kuipers, Jos B. T. M. Roerdink
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context. Comput. Graph. Forum 27 (3) (2008)
Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J. Hofstede, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinform. 9 (2008)
Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum
The relative value of operon predictions. Briefings Bioinform. 9 (5) (2008)
Diederik W. J. Bosman, Evert-Jan Blom, Patrick J. Ogao, Oscar P. Kuipers, Jos B. T. M. Roerdink
MOVE: A Multi-Level Ontology-Based Visualization and Exploration Framework for Genomic Networks. Silico Biol. 7 (1) (2007)
Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinform. 23 (9) (2007)
Anne de Jong, Sacha A. F. T. van Hijum, Jetta J. E. Bijlsma, Jan Kok, Oscar P. Kuipers
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Casper J. Albers, Ritsert C. Jansen, Jan Kok, Oscar P. Kuipers, Sacha A. F. T. van Hijum
SIMAGE: simulation of DNA-microarray gene expression data. BMC Bioinform. 7 (2006)
Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, Jan Kok
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinform. 20 (13) (2004)
Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Jan Kok, Oscar P. Kuipers
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons. Bioinform. 19 (12) (2003)