Sacha A. F. T. van Hijum

Publication Activity (10 Years)

Years Active: 2003-2016
Publications (10 Years): 1

Top Topics

Genomic Sequences

Dimensional Vector

Top Venues

Briefings Bioinform.

Publications

Wynand Alkema, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum
Microbial bioinformatics for food safety and production. Briefings Bioinform. 17 (2) (2016)
Lex Overmars, Sacha A. F. T. van Hijum, Roland J. Siezen, Christof Francke
CiVi: circular genome visualization with unique features to analyze sequence elements. Bioinform. 31 (17) (2015)
Wouter G. Touw, Jumamurat R. Bayjanov, Lex Overmars, Lennart Backus, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? Briefings Bioinform. 14 (3) (2013)
Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen
FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinform. 27 (14) (2011)
Kasper Dinkla, Michel A. Westenberg, H. M. Timmerman, Sacha A. F. T. van Hijum, Jarke J. van Wijk
Comparison of Multiple Weighted Hierarchies: Visual Analytics for Microbe Community Profiling. Comput. Graph. Forum 30 (3) (2011)
Michel A. Westenberg, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum
SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks. Bioinform. 26 (22) (2010)
Jumamurat R. Bayjanov, Roland J. Siezen, Sacha A. F. T. van Hijum
PanCGHweb: a web tool for genotype calling in pangenome CGH data. Bioinform. 26 (9) (2010)
Rutger W. W. Brouwer, Sacha A. F. T. van Hijum, Oscar P. Kuipers
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context. Bioinform. 25 (1) (2009)
Evert-Jan Blom, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum
MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data. Bioinform. 25 (4) (2009)
Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons. BMC Bioinform. 9 (2008)
Michel A. Westenberg, Sacha A. F. T. van Hijum, Oscar P. Kuipers, Jos B. T. M. Roerdink
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context. Comput. Graph. Forum 27 (3) (2008)
Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J. Hofstede, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinform. 9 (2008)
Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum
The relative value of operon predictions. Briefings Bioinform. 9 (5) (2008)
Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinform. 23 (9) (2007)
Anne de Jong, Sacha A. F. T. van Hijum, Jetta J. E. Bijlsma, Jan Kok, Oscar P. Kuipers
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Casper J. Albers, Ritsert C. Jansen, Jan Kok, Oscar P. Kuipers, Sacha A. F. T. van Hijum
SIMAGE: simulation of DNA-microarray gene expression data. BMC Bioinform. 7 (2006)
Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, Jan Kok
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinform. 20 (13) (2004)
Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles
PreP: gene expression data pre-processing. Bioinform. 19 (17) (2003)
Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Jan Kok, Oscar P. Kuipers
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons. Bioinform. 19 (12) (2003)