Irregular alignment of arbitrarily long DNA sequences on GPU.
Esteban Pérez-WohlfeilOswaldo TrellesNicolás GuilPublished in: J. Supercomput. (2023)
Keyphrases
- dna sequences
- rna sequences
- dna sequencing
- problems in computational biology
- binding sites
- human genome
- tandem repeats
- real time
- dna computing
- sequence patterns
- sequence alignment
- motif discovery
- gene structure prediction
- regulatory elements
- coding regions
- biological sequences
- nucleotide sequences
- general purpose
- similarity search
- multi objective