Ana Conesa

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 15

Top Topics

Biomedical Text

Data Integration

Gene Regulatory Networks

Top Venues

BMC Syst. Biol.

Nucleic Acids Res.

Publications

Manuel Ugidos, María José Nueda, José Manuel Prats-Montalbán, Alberto Ferrer, Ana Conesa, Sonia Tarazona
MultiBaC: an R package to remove batch effects in multi-omic experiments. Bioinform. 38 (9) (2022)
Tianyuan Liu, Pedro Salguero, Marko Petek, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Ziva Ramsak, Lauren McIntyre, Kristina Gruden, Sonia Tarazona, Ana Conesa
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. Nucleic Acids Res. 50 (W1) (2022)
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022 (2022) (2022)
Sonia Tarazona, Angeles Arzalluz-Luque, Ana Conesa
Undisclosed, unmet and neglected challenges in multi-omics studies. Nat. Comput. Sci. 1 (6) (2021)
Gabriela Alejandra Merino, Ana Conesa, Elmer Andrés Fernández
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies. Briefings Bioinform. 20 (2) (2019)
Camden Jansen, Ricardo N. Ramirez, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, Ali Mortazavi
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. PLoS Comput. Biol. 15 (11) (2019)
Qile Zhu, Xiaolin Li, Ana Conesa, Cecile Pereira
GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text. Bioinform. 34 (9) (2018)
Rafael Hernández-de-Diego, Sonia Tarazona, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Pedro Furió-Tarí, Georgios Joannis Pappas Jr., Ana Conesa
PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
María José Nueda, Jordi Martorell-Marugan, Cristina Martí, Sonia Tarazona, Ana Conesa
Identification and visualization of differential isoform expression in RNA-seq time series. Bioinform. 34 (3) (2018)
Rafael Hernández-de-Diego, Etienne P. de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam-Rudloff
The eBioKit, a stand-alone educational platform for bioinformatics. PLoS Comput. Biol. 13 (9) (2017)
Perla Lucía Ordóñez-Baquera, Everardo González-Rodríguez, Gerardo Armando Aguado-Santacruz, Quintín Rascón-Cruz, Ana Conesa, Verónica Moreno-Brito, Raquel Echavarria, Joel Dominguez-Viveros
Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis. Comput. Biol. Chem. 66 (2017)
Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis
Separating common from distinctive variation. BMC Bioinform. 17 (S-5) (2016)
Pedro Furió-Tarí, Sonia Tarazona, Toni Gabaldón, Anton J. Enright, Ana Conesa
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Pedro Furió-Tarí, Ana Conesa, Sonia Tarazona
RGmatch: matching genomic regions to proximal genes in omics data integration. BMC Bioinform. 17 (1) (2016)
Konstantin Okonechnikov, Ana Conesa, Fernando García-Alcalde
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data. Bioinform. 32 (2) (2016)
David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér
Data integration in the era of omics: current and future challenges. BMC Syst. Biol. 8 (S-2) (2014)
Ignacio Ponzoni, María José Nueda, Sonia Tarazona, Stefan Götz, David Montaner, Julieta Sol Dussaut, Joaquín Dopazo, Ana Conesa
Pathway network inference from gene expression data. BMC Syst. Biol. 8 (S-2) (2014)
Rafael Hernández-de-Diego, Noemi Boix-Chova, David Gomez-Cabrero, Jesper Tegnér, Imad Abugessaisa, Ana Conesa
STATegra EMS: an Experiment Management System for complex next-generation omics experiments. BMC Syst. Biol. 8 (S-2) (2014)
María José Nueda, Sonia Tarazona, Ana Conesa
Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series. Bioinform. 30 (18) (2014)
Ana Conesa, Ali Mortazavi
The common ground of genomics and systems biology. BMC Syst. Biol. 8 (S-2) (2014)
Patricia Sebastián-León, Enrique Vidal, Pablo Minguez, Ana Conesa, Sonia Tarazona, Alicia Amadoz, Carmen Armero, Francisco Salavert, Antonio Vidal-Puig, David Montaner, Joaquín Dopazo
Understanding disease mechanisms with models of signaling pathway activities. BMC Syst. Biol. 8 (2014)
Fernando García-Alcalde, Konstantin Okonechnikov, José Carbonell, Luis M. Cruz, Stefan Götz, Sonia Tarazona, Joaquín Dopazo, Thomas F. Meyer, Ana Conesa
Qualimap: evaluating next-generation sequencing alignment data. Bioinform. 28 (20) (2012)
Stefan Götz, Roland Arnold, Patricia Sebastián-León, Samuel Martín-Rodríguez, Patrick Tischler, Marc-André Jehl, Joaquín Dopazo, Thomas Rattei, Ana Conesa
B2G-FAR, a species-centered GO annotation repository. Bioinform. 27 (7) (2011)
Fernando García-Alcalde, Federico García-López, Joaquín Dopazo, Ana Conesa
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data. Bioinform. 27 (1) (2011)
María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa
Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Thomas Rattei, Patrick Tischler, Stefan Götz, Marc-André Jehl, Jonathan Hoser, Roland Arnold, Ana Conesa, Hans-Werner Mewes
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. Nucleic Acids Res. 38 (Database-Issue) (2010)
Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García-García, Joaquín Dopazo, Alberto Ferrer, Ana Conesa
Functional assessment of time course microarray data. BMC Bioinform. 10 (S-6) (2009)
Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. Bioinform. 23 (14) (2007)
Gabriel Aparício, Stefan Götz, Ana Conesa, Damià Segrelles, Ignacio Blanquer, Juan Miguel García, Vicente Hernández, Montserrat Robles, Manuel Talón
Blast2GO goes Grid: Developing a Grid-Enabled Prototype for Functional Genomics Analysis. HealthGrid (2006)
Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón
maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments. Bioinform. 22 (9) (2006)
Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinform. 21 (18) (2005)
Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón
maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments. Spanish Bioinformatics Conference (2004)
Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Montserrat Robles, Manuel Talón
Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics Research. Spanish Bioinformatics Conference (2004)