Age K. Smilde

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 16

Top Topics

Tensor Decomposition

Simulation Study

Cervical Cancer

Top Venues

BMC Syst. Biol.

PLoS Comput. Biol.

Publications

Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen, Age K. Smilde, Evrim Acar
Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinform. 25 (1) (2024)
Balázs Erdos, Johan A. Westerhuis, Michiel E. Adriaens, Shauna D. O'Donovan, Ren Xie, Cécile M. Singh-Povel, Age K. Smilde, Ilja C. W. Arts
Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+. PLoS Comput. Biol. 19 (6) (2023)
Florian Becker, Age K. Smilde, Evrim Acar
Unsupervised EHR-based phenotyping via matrix and tensor decompositions. WIREs Data. Mining. Knowl. Discov. 13 (4) (2023)
Lu Li, Huub C. J. Hoefsloot, Albert A. de Graaf, Evrim Acar, Age K. Smilde
Exploring dynamic metabolomics data with multiway data analysis: a simulation study. BMC Bioinform. 23 (1) (2022)
Florian Becker, Mari Nygård, Jan Nygård, Age K. Smilde, Evrim Acar
Phenotyping of Cervical Cancer Risk Groups via Generalized Low-Rank Models Using Medical Questionnaires. NAIS (2022)
Florian Becker, Age K. Smilde, Evrim Acar
Unsupervised EHR-based Phenotyping via Matrix and Tensor Decompositions. CoRR (2022)
Torfinn S. Madssen, Guro F. Giskeødegård, Age K. Smilde, Johan A. Westerhuis
Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data. PLoS Comput. Biol. 17 (11) (2021)
Frans M. van der Kloet, Jeroen Buurmans, Martijs J. Jonker, Age K. Smilde, Johan A. Westerhuis
Increased comparability between RNA-Seq and microarray data by utilization of gene sets. PLoS Comput. Biol. 16 (9) (2020)
Yipeng Song, Johan A. Westerhuis, Nanne Aben, Magali Michaut, Lodewyk F. A. Wessels, Age K. Smilde
Principal component analysis of binary genomics data. Briefings Bioinform. 20 (1) (2019)
J. Camacho, Age K. Smilde, E. Saccenti, Johan A. Westerhuis
All Sparse PCA Models Are Wrong, But Some Are Useful. Part I: Computation of Scores, Residuals and Explained Variance. CoRR (2019)
Abel Folch-Fortuny, Bas Teusink, Huub C. J. Hoefsloot, Age K. Smilde, Alberto Ferrer
Dynamic elementary mode modelling of non-steady state flux data. BMC Syst. Biol. 12 (1) (2018)
Nanne Aben, Johan A. Westerhuis, Yipeng Song, Henk A. L. Kiers, Magali Michaut, Age K. Smilde, Lodewyk F. A. Wessels
iTOP: inferring the topology of omics data. Bioinform. 34 (17) (2018)
Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis
Separating common from distinctive variation. BMC Bioinform. 17 (S-5) (2016)
Evrim Acar, Rasmus Bro, Age K. Smilde
Data Fusion in Metabolomics Using Coupled Matrix and Tensor Factorizations. Proc. IEEE 103 (9) (2015)
Dicle Hasdemir, Huub C. J. Hoefsloot, Age K. Smilde
Validation and selection of ODE based systems biology models: how to arrive at more reliable decisions. BMC Syst. Biol. 9 (2015)
Polina Reshetova, Age K. Smilde, Johan A. Westerhuis, Antoine H. C. van Kampen
Using Petri nets for experimental design in a multi-organ elimination pathway. Comput. Biol. Medicine 63 (2015)
Dicle Hasdemir, Huub C. J. Hoefsloot, Johan A. Westerhuis, Age K. Smilde
How informative is your kinetic model?: using resampling methods for model invalidation. BMC Syst. Biol. 8 (2014)
Polina Reshetova, Age K. Smilde, Antoine H. C. van Kampen, Johan A. Westerhuis
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. BMC Syst. Biol. 8 (S-2) (2014)
Age K. Smilde, Marieke E. Timmerman, Margriet M. W. B. Hendriks, Jeroen J. Jansen, Huub C. J. Hoefsloot
Generic framework for high-dimensional fixed-effects ANOVA. Briefings Bioinform. 13 (5) (2012)
Cheng-Jian Xu, Huub C. J. Hoefsloot, Age K. Smilde
To aggregate or not to aggregate high-dimensional classifiers. BMC Bioinform. 12 (2011)
Uwe Thissen, Suzan Wopereis, Sjoerd A. A. van den Berg, Ivana Bobeldijk, Robert Kleemann, Teake Kooistra, Ko Willems van Dijk, Ben van Ommen, Age K. Smilde
Improving the analysis of designed studies by combining statistical modelling with study design information. BMC Bioinform. 10 (2009)
Jeroen J. Jansen, Nicole M. van Dam, Huub C. J. Hoefsloot, Age K. Smilde
Crossfit analysis: a novel method to characterize the dynamics of induced plant responses. BMC Bioinform. 10 (2009)
Age K. Smilde, Henk A. L. Kiers, S. Bijlsma, C. M. Rubingh, M. J. van Erk
Matrix correlations for high-dimensional data: the modified RV-coefficient. Bioinform. 25 (3) (2009)
Katrijn Van Deun, Age K. Smilde, Mariët J. van der Werf, Henk A. L. Kiers, Iven Van Mechelen
A structured overview of simultaneous component based data integration. BMC Bioinform. 10 (2009)
Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. L. Kiers, Age K. Smilde
Integrating functional genomics data using maximum likelihood based simultaneous component analysis. BMC Bioinform. 10 (2009)
Henk A. L. Kiers, Age K. Smilde
A comparison of various methods for multivariate regression with highly collinear variables. Stat. Methods Appl. 16 (2) (2007)
María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. Bioinform. 23 (14) (2007)
Daniel J. Vis, Johan A. Westerhuis, Age K. Smilde, Jan van der Greef
Statistical validation of megavariate effects in ASCA. BMC Bioinform. 8 (2007)
Henk-Jan Ramaker, Eric N. M. van Sprang, Johan A. Westerhuis, Age K. Smilde
Single channel event (SCE) for managing sensor failures in MSPC. Comput. Chem. Eng. 30 (6-7) (2006)
Age K. Smilde, Jeroen J. Jansen, Huub C. J. Hoefsloot, Robert-Jan A. N. Lamers, Jan van der Greef, Marieke E. Timmerman
ANOVA-simultaneous component analysis (ASCA): a new tool for analyzing designed metabolomics data. Bioinform. 21 (13) (2005)
Jeroen J. Jansen, Huub C. J. Hoefsloot, Hans F. M. Boelens, Jan van der Greef, Age K. Smilde
Analysis of longitudinal metabolomics data. Bioinform. 20 (15) (2004)
Jonas Nilsson, Evert J. Homan, Age K. Smilde, Cor J. Grol, Håkan Wikstrüm
A multiway 3D QSAR analysis of a series of (S)-N-[(1-ethyl-2-pyrrolidinyl)methyl]-6-methoxybenzamides. J. Comput. Aided Mol. Des. 12 (1) (1998)