Barbara M. Bakker

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 3

Top Topics

Beta Distribution

Metabolic Pathways

Simulation Study

Active Databases

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Publications

Lu Li, Shi Yan, Barbara M. Bakker, Huub C. J. Hoefsloot, Bo Chawes, David Horner, Morten A. Rasmussen, Age K. Smilde, Evrim Acar
Analyzing postprandial metabolomics data using multiway models: a simulation study. BMC Bioinform. 25 (1) (2024)
Fentaw Abegaz, Anne-Claire M. F. Martines, Marcel A. Vieira-Lara, Melany Rios-Morales, Dirk-Jan Reijngoud, Ernst C. Wit, Barbara M. Bakker
Bistability in fatty-acid oxidation resulting from substrate inhibition. PLoS Comput. Biol. 17 (8) (2021)
Anne-Claire M. F. Martines, Karen van Eunen, Dirk-Jan Reijngoud, Barbara M. Bakker
The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation. PLoS Comput. Biol. 13 (4) (2017)
Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana
A model reduction method for biochemical reaction networks. BMC Syst. Biol. 8 (2014)
Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej Trybilo, Nicole N. Driessen, David R. Gilbert, Rainer Breitling, Barbara M. Bakker, Michael P. Barrett
. PLoS Comput. Biol. 9 (12) (2013)
Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana
Model-order reduction of biochemical reaction networks. ECC (2013)
Karen van Eunen, Sereh M. J. Simons, Albert Gerding, Aycha Bleeker, Gijs den Besten, Catharina M. L. Touw, Sander M. Houten, Bert K. Groen, Klaas Krab, Dirk-Jan Reijngoud, Barbara M. Bakker
Biochemical Competition Makes Fatty-Acid β-Oxidation Vulnerable to Substrate Overload. PLoS Comput. Biol. 9 (8) (2013)
Fiona Achcar, Eduard J. Kerkhoven, Barbara M. Bakker, Michael P. Barrett, Rainer Breitling
Energy Metabolism. PLoS Comput. Biol. 8 (1) (2012)
Karen van Eunen, José A. L. Kiewiet, Hans V. Westerhoff, Barbara M. Bakker
Enzyme Kinetics. PLoS Comput. Biol. 8 (4) (2012)
Shodhan Rao, Arjan van der Schaft, Karen van Eunen, Barbara M. Bakker, Bayu Jayawardhana
Model-order reduction of biochemical reaction networks CoRR (2012)
Marvin Schulz, Barbara M. Bakker, Edda Klipp
TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinform. 10 (2009)