Moara: a Java library for extracting and normalizing gene and protein mentions.
Mariana L. NevesJosé María CarazoAlberto D. Pascual-MontanoPublished in: BMC Bioinform. (2010)
Keyphrases
- cross platform
- sequence alignment
- cellular processes
- protein protein interaction networks
- homo sapiens
- gene prediction
- regulatory networks
- biological entities
- gene expression
- interaction networks
- microarray
- protein interaction
- genomic sequences
- dna binding
- protein sequences
- programming language
- protein structure
- gene expression data
- open source
- saccharomyces cerevisiae
- biological knowledge
- protein function
- protein protein interactions
- nucleotide sequences
- source code
- amino acids
- protein folding
- signaling pathways
- gene ontology terms
- human genome
- java programs
- knowledge base
- experimental conditions
- coreference resolution
- gene ontology
- dna sequences
- object oriented
- gene networks
- biological processes
- drug design
- biomedical literature
- gene regulatory networks
- computational biology