José-Jesús Fernández

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 4

Top Topics

Electron Microscopy

Tubular Structures

Top Venues

J. Supercomput.

Publications

Vicente González Ruiz, Juan José Moreno, José-Jesús Fernández
Acceleration of 3D feature-enhancing noise filtering in hybrid CPU/GPU systems. J. Supercomput. 80 (9) (2024)
Vicente González Ruiz, José-Jesús Fernández
FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM). SoftwareX 23 (2023)
J. J. Moreno, Ester M. Garzón, José-Jesús Fernández, Antonio Martínez-Sánchez
HPC enables efficient 3D membrane segmentation in electron tomography. J. Supercomput. 78 (17) (2022)
J. J. Moreno, Antonio Martínez-Sánchez, José A. Martínez, Ester M. Garzón, José-Jesús Fernández
TomoEED: fast edge-enhancing denoising of tomographic volumes. Bioinform. 34 (21) (2018)
Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón
Automatic tuning of the sparse matrix vector product on GPUs based on the ELLR-T approach. Parallel Comput. 38 (8) (2012)
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
Segmentation of Planar Structures in Bioimaging. VISAPP (2) (2012)
Jose Ignacio Agulleiro Baldo, Francisco Miguel Vázquez López, Ester M. Garzón, José-Jesús Fernández
Dynamic Load Scheduling on CPU-GPU for Iterative Tomographic Reconstruction. ISPA (2012)
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps. PACBB (2012)
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
A generic model for ridges: A new framework to characterise biological planar structures. ISBI (2012)
Francisco Vázquez, Gloria Ortega López, José-Jesús Fernández, Inmaculada García, Ester M. Garzón
Fast Sparse Matrix Matrix Product Based on ELLR-T and GPU Computing. ISPA (2012)
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
Parallel algorithms for continuous multifacility competitive location problems. J. Glob. Optim. 50 (4) (2011)
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
Solving the facility location and design (1∣1)-centroid problem via parallel algorithms. J. Supercomput. 58 (3) (2011)
Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón
A new approach for sparse matrix vector product on NVIDIA GPUs. Concurr. Comput. Pract. Exp. 23 (8) (2011)
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
Multi-core Desktop Processors Make Possible Real-Time Electron Tomography. PDP (2011)
Jose Ignacio Agulleiro Baldo, José-Jesús Fernández
Fast tomographic reconstruction on multicore computers. Bioinform. 27 (4) (2011)
Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández
Matrix Implementation of Simultaneous Iterative Reconstruction Technique (SIRT) on GPUs. Comput. J. 54 (11) (2011)
Paula Cecilia Fritzsche, José-Jesús Fernández, Dolores Rexachs, Inmaculada García, Emilio Luque
Analytical Performance Prediction for Iterative Reconstruction Techniques in Electron Tomography of Biological Structures. Int. J. High Perform. Comput. Appl. 24 (4) (2010)
José A. Martínez, Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández
Real-Time Electron Tomography Based on GPU Computing. Euro-Par Workshops (2010)
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
Heuristics for the facility location and design (1|1)-centroid problem on the plane. Comput. Optim. Appl. 45 (1) (2010)
M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández
A Hybrid Parallel Approach for 3D Reconstruction of Cellular Specimens. DCAI (2010)
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García Fernández, José-Jesús Fernández
Ultra-fast Tomographic Reconstruction with a Highly Optimized Weighted Back-Projection Algorithm. PDP (2010)
José-Jesús Fernández, José A. Martínez
Three-dimensional feature-preserving noise reduction for real-time electron tomography. Digit. Signal Process. 20 (4) (2010)
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. Bioinform. 26 (21) (2010)
Francisco Vázquez, Gloria Ortega López, José-Jesús Fernández, Ester M. Garzón
Improving the Performance of the Sparse Matrix Vector Product with GPUs. CIT (2010)
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
A robust and efficient algorithm for planar competitive location problems. Ann. Oper. Res. 167 (1) (2009)
José-Jesús Fernández
TOMOBFLOW: feature-preserving noise filtering for electron tomography. BMC Bioinform. 10 (2009)
M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández
Evaluation of Master-Slave Approaches for 3D Reconstruction in Electron Tomography. IWANN (2) (2009)
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
Solving the Multiple Competitive Facilities Location and Design Problem on the Plane. Evol. Comput. 17 (1) (2009)
José-Jesús Fernández, Dan Gordon, Rachel Gordon
Efficient parallel implementation of iterative reconstruction algorithms for electron tomography. J. Parallel Distributed Comput. 68 (5) (2008)
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
Fast Tomographic Reconstruction with Vectorized Backprojection. PDP (2008)
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
High performance noise reduction for biomedical multidimensional data. Digit. Signal Process. 17 (4) (2007)
José-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini
Electron tomography of complex biological specimens on the Grid. Future Gener. Comput. Syst. 23 (3) (2007)
José-Jesús Fernández, Sam Li, Vladan Lucic
Three-Dimensional Anisotropic Noise Reduction with Automated Parameter Tuning: Application to Electron Cryotomography. CAEPIA (2007)
José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández
A Load Balancing Framework in Multithreaded Tomographic Reconstruction. PARCO (2007)
Jose-Roman Bilbao-Castro, Inmaculada García, José-Jesús Fernández
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography. Bioinform. 23 (24) (2007)
José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández
Multithreaded Tomographic Reconstruction. PVM/MPI (2007)
Jose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández
Parameter optimization in 3D reconstruction on a large scale grid. Parallel Comput. 33 (4-5) (2007)
Pilar Martínez Ortigosa, Juana López Redondo, Inmaculada García, José-Jesús Fernández
A population global optimization algorithm to solve the image alignment problem in electron crystallography. J. Glob. Optim. 37 (4) (2007)
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
Evaluation of Parallel Paradigms on Anisotropic Nonlinear Diffusion. Euro-Par (2006)
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
Multiprocessing of Anisotropic Nonlinear Diffusion for Filtering 3D Images. PDP (2006)
José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo
Image processing and 3-D reconstruction in electron microscopy. IEEE Signal Process. Mag. 23 (3) (2006)
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
Filtering 3D images in Structural Biology with Anisotropic Nonlinear Diffusion on SMP Clusters. PARCO (2005)
Paula Cecilia Fritzsche, Ana Ripoll, Emilio Luque, José-Jesús Fernández, Inmaculada García
A Performance Prediction for Iterative Reconstruction Techniques on Tomography. PDP (2005)
José-Jesús Fernández, Sam Li
Anisotropic nonlinear filtering of cellular structures in cryoelectron tomography. Comput. Sci. Eng. 7 (5) (2005)
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
Phan3D: design of biological phantoms in 3D electron microscopy. Bioinform. 20 (17) (2004)
Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman
3-D reconstruction of 2-D crystals in real space. IEEE Trans. Image Process. 13 (4) (2004)
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
Biological Structure Determination by EM is Well Suited to Grid Computing. New Gener. Comput. 22 (2) (2004)
José-Jesús Fernández, José María Carazo, Inmaculada García
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing. J. Parallel Distributed Comput. 64 (2) (2004)
Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández
Image Registration in Electron Microscopy. A Stochastic Optimization Approach. ICIAR (2) (2004)
Jose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García
Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. PDP (2004)
Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández
The Potential Of Grid Computing In Three-Dimensional Electron Microscopy. Parallel Process. Lett. 14 (2) (2004)
Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández
A global optimization approach to image translational alignment in electron microscopy. SMC (5) (2004)
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing. New Gener. Comput. 23 (1) (2004)
Paula Cecilia Fritzsche, José-Jesús Fernández, Ana Ripoll, Inmaculada García, Emilio Luque
A Performance Prediction Model for Tomographic Reconstruction in Structural Biology. VECPAR (2004)
Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. ICIP (1) (2003)
José-Jesús Fernández, Inmaculada García, Ester M. Garzón
Educational issues on number representation and arithmetic in computers: an undergraduate laboratory. IEEE Trans. Educ. 46 (4) (2003)
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography. European Across Grids Conference (2003)
José-Jesús Fernández, Inmaculada García, Ester M. Garzón
Floating point arithmetic teaching for computational science. Future Gener. Comput. Syst. 19 (8) (2003)
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej
3D reconstruction of 2D crystals from projections in real space. ISBI (2002)
José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR (2002)
Vicente González Ruiz, José-Jesús Fernández, Manuel F. López, Inmaculada García
Progressive Image Transmission in Telemicroscopy: A Quantitative Approach for Electron Microscopy Images of Biological Specimens. Real Time Imaging 8 (6) (2002)
Ester M. Garzón, Inmaculada García, José-Jesús Fernández
An Approach to Teaching Computer Arithmetic. VECPAR (2002)
Vicente González Ruiz, Manuel F. López, José-Jesús Fernández, Inmaculada García
Techniques for Speeding up the SPIHT Progressive Image Compressor. VIIP (2001)
Manuel F. López, Vicente González Ruiz, José-Jesús Fernández, Inmaculada García
Progessive-fidelity Image Transmission for Telebrowsing: An Efficient Implementation. VIIP (2001)
Roberto Marabini, C. Vaquerizo, José-Jesús Fernández, José María Carazo, M. Ladjadj, O. Odesanya, J. Frank
Prototype for a new distributed database of volume data obtained by 3D imaging. VBC (1994)