Joan Segura

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 10

Top Topics

Electron Microscopy

Experimentally Determined

Protein Data Bank

Amino Acid Sequences

Top Venues

Nucleic Acids Res.

Frontiers Bioinform.

Publications

Joan Segura, Yana Rose, Chunxiao Bi, Jose M. Duarte, Stephen K. Burley, Sebastian Bittrich
RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins. Frontiers Bioinform. 3 (2023)
Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 51 (D1) (2023)
Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D. Westbrook, Jose M. Duarte, Stephen K. Burley
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. Bioinform. 38 (5) (2022)
Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K. Burley, Jose M. Duarte
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. Bioinform. 38 (12) (2022)
Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, Gregg V. Crichlow, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sai Ganesan, David S. Goodsell, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Persikova, Christopher Randle, Alexander S. Rose, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Yi-Ping Tao, Maria Voigt, John D. Westbrook, Jasmine Young, Christine Zardecki, Marina Zhuravleva
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 49 (Database-Issue) (2021)
Joan Segura, Yana Rose, John D. Westbrook, Stephen K. Burley, Jose M. Duarte
RCSB Protein Data Bank 1D tools and services. Bioinform. 36 (22-23) (2021)
Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinform. 35 (18) (2019)
Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinform. 35 (14) (2019)
Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinform. 35 (3) (2019)
Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. Bioinform. 33 (22) (2017)
Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo
Using neighborhood cohesiveness to infer interactions between protein domains. Bioinform. 31 (15) (2015)
Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes
structure-based protein design. Bioinform. 30 (13) (2014)
Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo
Integrating human and murine anatomical gene expression data for improved comparisons. Bioinform. 28 (3) (2012)
Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes
approach to predict functional sites in protein structures. Bioinform. 28 (14) (2012)
Joan Segura, Baldomero Oliva, Narcis Fernandez-Fuentes
: a structural classification of helix-capping motifs. Nucleic Acids Res. 40 (Database-Issue) (2012)
Joan Segura, Narcis Fernandez-Fuentes
DB: a database of computationally annotated hot spots in protein interfaces. Nucleic Acids Res. 39 (Database-Issue) (2011)
Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes
Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams. BMC Bioinform. 12 (2011)
Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. Bioinform. 25 (19) (2009)
Jairo Rocha, Joan Segura, Richard C. Wilson, Swagata Dasgupta
Flexible structural protein alignment by a sequence of local transformations. Bioinform. 25 (13) (2009)
Jairo Rocha, Francesc Rosselló, Joan Segura
Compression ratios based on the Universal Similarity Metric still yield protein distances far from CATH distances CoRR (2006)