Samik Ghosh

Publication Activity (10 Years)

Years Active: 2004-2017
Publications (10 Years): 4

Top Topics

Partitioning Algorithm

Influenza Virus

Maximal Cliques

Breadth First Search

Top Venues

Artif. Life Robotics

Publications

Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research 6 (2017)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. CoRR (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Extracting Biological Pathway Models From NLP Event Representations. CoRR (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. BioNLP@ACL (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Extracting Biological Pathway Models From NLP Event Representations. BioNLP@IJCNLP (2015)
Takeshi Hase, Kaito Kikuchi, Samik Ghosh, Hiroaki Kitano, Hiroshi Tanaka
Identification of drug-target modules in the human protein-protein interaction network. Artif. Life Robotics 19 (4) (2014)
Takeshi Hase, Samik Ghosh, Ryota Yamanaka, Hiroaki Kitano
Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks. PLoS Comput. Biol. 9 (11) (2013)
Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano
A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. EMBC (2013)
Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7 (2013)
Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst. Biol. 6 (2012)
Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano
Payao: a community platform for SBML pathway model curation. Bioinform. 26 (10) (2010)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das
Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach. Discret. Appl. Math. 157 (10) (2009)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das
Holding time estimation for reactions in stochastic event-based simulation of complex biological systems. Simul. Model. Pract. Theory 16 (10) (2008)
Samik Ghosh, Huan Li, Hee Lee, Prabir Das, Kalyan Basu, Sajal K. Das
Revisiting the Optimal Partitioning of Zones in Next Generation Cellular Networks: A Network Capacity Impact Perspective. International Teletraffic Congress (2007)
Habiba Skalli, Samik Ghosh, Sajal K. Das, Luciano Lenzini
Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions. IEEE Commun. Mag. 45 (11) (2007)
Samik Ghosh, Kalyan Basu, Sajal K. Das
"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks. Ad Hoc Networks 5 (6) (2007)
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das
Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis. BIBM (2007)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das
A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation. Trans. Comp. Sys. Biology 8 (2007)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes. CIBCB (2007)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler
Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems. ICCSA (1) (2006)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler
A Stochastic model to estimate the time taken for Protein-Ligand Docking. CIBCB (2006)
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems. Annual Simulation Symposium (2006)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler
An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems. GrC (2006)
Samik Ghosh, Kalyan Basu, Sajal K. Das
FraNtiC: A Fractal Geometric Framework for Mesh-Based Wireless Access Networks. ICDCS (2005)
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das
GaMa : An Evolutionary Algorithmic Approach for the Design of Mesh-Based Radio Access Networks. LCN (2005)
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems. CSB Workshops (2005)
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das
A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks. CSB Workshops (2005)
Samik Ghosh, Pradip De, Kalyan Basu, Sajal K. Das
PeterNet: An Emergent Technology Based Radio Access Network Architecture for Next Generation Cellular Wireless Systems. BROADNETS (2004)