Dexter Pratt

Publication Activity (10 Years)

Years Active: 1990-2024
Publications (10 Years): 9

Top Topics

Inclusion Dependencies

Database Schema

Reasoning Process

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Chi-Yang Hsu, Kyle Cox, Jiawei Xu, Zhen Tan, Tianhua Zhai, Mengzhou Hu, Dexter Pratt, Tianlong Chen, Ziniu Hu, Ying Ding
Thought Graph: Generating Thought Process for Biological Reasoning. WWW (Companion Volume) (2024)
Chi-Yang Hsu, Kyle Cox, Jiawei Xu, Zhen Tan, Tianhua Zhai, Mengzhou Hu, Dexter Pratt, Tianlong Chen, Ziniu Hu, Ying Ding
Thought Graph: Generating Thought Process for Biological Reasoning. CoRR (2024)
Rudolf T. Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, Trey Ideker, Klas Karis, Sophie N. Liu, Keiichiro Ono, Alexander R. Pico, Dexter Pratt
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. Bioinform. 39 (3) (2023)
Dexter Pratt, Rudolf T. Pillich, John H. Morris
Translating desktop success to the web in the cytoscape project. Frontiers Bioinform. 3 (2023)
Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf T. Pillich, Robin Bachelder, Trey Ideker, Dexter Pratt
Evaluation of large language models for discovery of gene set function. CoRR (2023)
Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C. Lovering, Sandra E. Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Åsmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J. Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D. Thomas, Dénes Türei, Martin Kuiper
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). Bioinform. 36 (24) (2021)
Akshat Singhal, Song Cao, Christopher Churas, Dexter Pratt, Santo Fortunato, Fan Zheng, Trey Ideker
Multiscale community detection in Cytoscape. PLoS Comput. Biol. 16 (10) (2020)
Florian Auer, Zaynab Hammoud, Alexandr Ishkin, Dexter Pratt, Trey Ideker, Frank Kramer
ndexr - an R package to interface with the network data exchange. Bioinform. 34 (4) (2018)
Daniel E. Carlin, Barry Demchak, Dexter Pratt, Eric Sage, Trey Ideker
Network propagation in the cytoscape cyberinfrastructure. PLoS Comput. Biol. 13 (10) (2017)
Janusz Dutkowski, Keiichiro Ono, Michael Kramer, Michael Yu, Dexter Pratt, Barry Demchak, Trey Ideker
NeXO Web: the NeXO ontology database and visualization platform. Nucleic Acids Res. 42 (Database-Issue) (2014)
Natalie L. Catlett, Anthony J. Bargnesi, Stephen Ungerer, Toby Seagaran, William Ladd, Keith O. Elliston, Dexter Pratt
Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data. BMC Bioinform. 14 (2013)
Florian Martin, Ty M. Thomson, Alain Sewer, David A. Drubin, Carole Mathis, Dirk Weisensee, Dexter Pratt, Julia Hoeng, Manuel C. Peitsch
Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks. BMC Syst. Biol. 6 (2012)
Dexter Pratt, William C. Hahn, Andrea Matthews, Phillip Febbo, Ranann Berger, Brian Duckworth, Josh Levy, Toby Segaran, Justin Sun, Bill Ladd, Keith O. Elliston
Computational Causal Reasoning Models of Mechanisms of Androgen Stimulation in Prostate Cancer. EMBC (2006)
Douglas B. Lenat, Ramanathan V. Guha, Karen Pittman, Dexter Pratt, Mary Shepherd
CYC: Toward Programs With Common Sense. Commun. ACM 33 (8) (1990)