Simona Panni

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 6

Top Topics

Genome Sequences

Molecular Interactions

Secondary Structure

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Simona Panni, Kalpana Panneerselvam, Pablo Porras, Margaret J. Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra E. Orchard
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study. Database J. Biol. Databases Curation 2023 (2023)
Noemi del-Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin W. Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret J. Duesbury, Sylvain D. Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic Acids Res. 50 (D1) (2022)
Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C. Lovering, Sandra E. Orchard, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Åsmund Flobak, Pascale Gaudet, Henning Hermjakob, Charles Tapley Hoyt, Luana Licata, Astrid Lægreid, Christopher J. Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras, Dexter Pratt, Julio Saez-Rodriguez, Denis Thieffry, Paul D. Thomas, Dénes Türei, Martin Kuiper
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). Bioinform. 36 (24) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, K. Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, M. Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020)
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinform. 19 (1) (2018)
Simona Panni, Simona E. Rombo
Searching for repetitions in biological networks: methods, resources and tools. Briefings Bioinform. 16 (1) (2015)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
Asymmetric Comparison and Querying of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (4) (2011)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
"Master-Slave" Biological Network Alignment. ISBRA (2010)
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo
Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). SEBD (2010)
Andrew Chatr-aryamontri, Arnaud Céol, Daniele Peluso, Aurelio Nardozza, Simona Panni, Francesca Sacco, Michele Tinti, Alex Smolyar, Luisa Castagnoli, Marc Vidal, Michael E. Cusick, Gianni Cesareni
VirusMINT: a viral protein interaction database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
A technique to search for functional similarities in protein-protein interaction networks. Int. J. Data Min. Bioinform. 3 (4) (2009)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Extracting similar sub-graphs across PPI networks. ISCIS (2009)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Singling out functional similarities in graph databases. SEBD (2008)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. BIRD (2008)
Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo
GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. BIBM (2007)