Eric P. Nawrocki

Publication Activity (10 Years)

Years Active: 2007-2022
Publications (10 Years): 10

Top Topics

Secondary Structure

Genomic Sequences

Hepatitis C Virus

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Beverly A. Underwood, Linda Yankie, Eric P. Nawrocki, Vasuki Palanigobu, Sergiy Gotvyanskyy, Vincent C. Calhoun, Michael Kornbluh, Thomas G. Smith, Lydia Fleischmann, Denis Sinyakov, Colleen J. Bollin, Ilene Karsch-Mizrachi
Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank. Database J. Biol. Databases Curation 2022 (2022) (2022)
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22 (2) (2021)
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49 (Database-Issue) (2021)
Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki
Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation. BMC Bioinform. 22 (1) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Alejandro A. Schäffer, Eneida Hatcher, Linda Yankie, Lara Shonkwiler, J. Rodney Brister, Ilene Karsch-Mizrachi, Eric P. Nawrocki
VADR: validation and annotation of virus sequence submissions to GenBank. BMC Bioinform. 21 (1) (2020)
Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki, Elena Rivas, Sean R. Eddy, Alex Bateman, Robert D. Finn, Anton I. Petrov
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Res. 46 (Database-Issue) (2018)
Alejandro A. Schäffer, Eric P. Nawrocki, Yoon Choi, Paul A. Kitts, Ilene Karsch-Mizrachi, Richard McVeigh
VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening. Bioinform. 34 (5) (2018)
Eneida Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister
Virus Variation Resource - improved response to emergent viral outbreaks. Nucleic Acids Res. 45 (Database-Issue) (2017)
Eric P. Nawrocki, Sarah W. Burge, Alex Bateman, Jennifer Daub, Ruth Y. Eberhardt, Sean R. Eddy, Evan W. Floden, Paul P. Gardner, Thomas A. Jones, John G. Tate, Robert D. Finn
Rfam 12.0: updates to the RNA families database. Nucleic Acids Res. 43 (Database-Issue) (2015)
Sarah W. Burge, Jennifer Daub, Ruth Y. Eberhardt, John G. Tate, Lars Barquist, Eric P. Nawrocki, Sean R. Eddy, Paul P. Gardner, Alex Bateman
Rfam 11.0: 10 years of RNA families. Nucleic Acids Res. 41 (Database-Issue) (2013)
Eric P. Nawrocki, Sean R. Eddy
Infernal 1.1: 100-fold faster RNA homology searches. Bioinform. 29 (22) (2013)
Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman
Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res. 39 (Database-Issue) (2011)
Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy
Infernal 1.0: inference of RNA alignments. Bioinform. 25 (13) (2009)
Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman
Rfam: updates to the RNA families database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy
Infernal 1.0: inference of RNA alignments. Bioinform. 25 (10) (2009)
Eric P. Nawrocki, Sean R. Eddy
Query-Dependent Banding (QDB) for Faster RNA Similarity Searches. PLoS Comput. Biol. 3 (3) (2007)