Chris Upton

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 1

Top Topics

Phylogenetic Trees

Computational Tools

Maximum Parsimony

Top Venues

Briefings Bioinform.

Publications

Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22 (2) (2021)
Chad Smithson, Samantha Kampman, Benjamin M. Hetman, Chris Upton
Incongruencies in Vaccinia Virus Phylogenetic Trees. Comput. 2 (4) (2014)
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
Suffix trees for very large genomic sequences. CIKM (2009)
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
A graph approach to the threshold all-against-all substring matching problem. ACM J. Exp. Algorithmics 12 (2008)
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
A new method for indexing genomes using on-disk suffix trees. CIKM (2008)
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings. BIBE (2007)
Jamie M. Thomas, Daniel Horspool, Gordon Brown, Vasily Tcherepanov, Chris Upton
GraphDNA: a Java program for graphical display of DNA composition analyses. BMC Bioinform. 8 (2007)
Aijazuddin Syed, Chris Upton
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis. BMC Bioinform. 7 (2006)
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upton
A New Algorithm for Fast All-Against-All Substring Matching. SPIRE (2006)
Melissa Da Silva, Ling Shen, Vasily Tcherepanov, Cristalle Watson, Chris Upton
Predicted function of the vaccinia virus G5R protein. Bioinform. 22 (23) (2006)
Joe Whitney, David J. Esteban, Chris Upton
Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches. BMC Bioinform. 6 (2005)
Elliot J. Lefkowitz, Chris Upton, Shankar S. Changayil, Charles Buck, Paula Traktman, R. Mark L. Buller
informational and analytical resource. Nucleic Acids Res. 33 (Database-Issue) (2005)
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasily Tcherepanov, Chris Upton
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments. BMC Bioinform. 5 (2004)
Ryan Brodie, Rachel L. Roper, Chris Upton
JDotter: a Java interface to multiple dotplots generated by dotter. Bioinform. 20 (2) (2004)
Angelika Ehlers, John Osborne, Stephanie Slack, Rachel L. Roper, Chris Upton
Poxvirus Orthologous Clusters (POCs). Bioinform. 18 (11) (2002)
Matthew Boone, Chris Upton
BLAST Search Updater: a notification system for new database matches. Bioinform. 16 (11) (2000)
David Hiscock, Chris Upton
Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes. Bioinform. 16 (5) (2000)