David L. Robertson

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 13

Top Topics

Nucleotide Sequences

Immune Response

Top Venues

PLoS Comput. Biol.

Publications

Kieran D. Lamb, Martha M. Luka, Megan Saathoff, Richard J. Orton, My V. T. Phan, Matthew Cotten, Ke Yuan, David L. Robertson
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules. PLoS Comput. Biol. 20 (1) (2024)
Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto
HIHISIV: a database of gene expression in HIV and SIV host immune response. BMC Bioinform. 25 (1) (2024)
Haiting Chai, Quan Gu, Joseph Hughes, David L. Robertson
In silico prediction of HIV-1-host molecular interactions and their directionality. PLoS Comput. Biol. 18 (2) (2022)
Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22 (2) (2021)
Francesca Young, Simon Rogers, David L. Robertson
Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput. Biol. 16 (5) (2020)
Ruth Alexandra Stoney, Jean-Marc Schwartz, David L. Robertson, Goran Nenadic
Using set theory to reduce redundancy in pathway sets. BMC Bioinform. 19 (1) (2018)
Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson
Marginalised stack denoising autoencoders for metagenomic data binning. CIBCB (2017)
Bede Constantinides, David L. Robertson
Kindel: indel-aware consensus for nucleotide sequence alignments. J. Open Source Softw. 2 (15) (2017)
Avraam Tapinos, David L. Robertson
De novo assembly of nucleotide sequences in a compressed feature space. CIBCB (2017)
Michail Tsimpidis, Georgios Bachoumis, Kalliopi Mimouli, Zaharoula Kyriakopoulou, David L. Robertson, Panayotis Markoulatos, Grigoris D. Amoutzias
T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. BMC Bioinform. 18 (1) (2017)
Samaneh Kouchaki, Santosh Tirunagari, Avraam Tapinos, David L. Robertson
Local binary patterns as a feature descriptor in alignment-free visualisation of metagenomic data. SSCI (2016)
Geraint Duck, Aleksandar Kovacevic, David L. Robertson, Robert Stevens, Goran Nenadic
Ambiguity and variability of database and software names in bioinformatics. J. Biomed. Semant. 6 (2015)
Oyebode J. Oyeyemi, Oluwafemi Davies, David L. Robertson, Jean-Marc Schwartz
A logical model of HIV-1 interactions with the T-cell activation signalling pathway. Bioinform. 31 (7) (2015)
Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens
Extracting patterns of database and software usage from the bioinformatics literature. Bioinform. 30 (17) (2014)
Geraint Duck, Goran Nenadic, Andy Brass, David L. Robertson, Robert Stevens
bioNerDS: exploring bioinformatics' database and software use through literature mining. BMC Bioinform. 14 (2013)
Daniel G. Jamieson, Phoebe M. Roberts, David L. Robertson, Ben Sidders, Goran Nenadic
Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. Database J. Biol. Databases Curation 2013 (2013)
Daniel G. Jamieson, Martin Gerner, Farzaneh Sarafraz, Goran Nenadic, David L. Robertson
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. Database J. Biol. Databases Curation 2012 (2012)
John P. Archer, Greg Baillie, Simon J. Watson, Paul Kellam, Andrew Rambaut, David L. Robertson
Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. BMC Bioinform. 13 (2012)
John P. Archer, Andrew Rambaut, Bruce E. Taillon, P. Richard Harrigan, Marilyn Lewis, David L. Robertson
The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time - An Ultra-Deep Approach. PLoS Comput. Biol. 6 (12) (2010)
Jamie I. MacPherson, Jonathan E. Dickerson, John W. Pinney, David L. Robertson
Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems. PLoS Comput. Biol. 6 (7) (2010)
Jonathan E. Dickerson, John W. Pinney, David L. Robertson
The biological context of HIV-1 host interactions reveals subtle insights into a system hijack. BMC Syst. Biol. 4 (2010)
Jamie I. MacPherson, John W. Pinney, David L. Robertson
JNets: Exploring networks by integrating annotation. BMC Bioinform. 10 (2009)
John P. Archer, John W. Pinney, Jun Fan, Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, David L. Robertson
Identifying the Important HIV-1 Recombination Breakpoints. PLoS Comput. Biol. 4 (9) (2008)
James M. Eales, John W. Pinney, Robert D. Stevens, David L. Robertson
Methodology capture: discriminating between the "best" and the rest of community practice. BMC Bioinform. 9 (2008)
Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. BMC Syst. Biol. 1 (2007)
John P. Archer, David L. Robertson
: comparison of clusters between phylogenetic trees made easy. Bioinform. 23 (21) (2007)
Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson
Similarity in expression accounts for correlated evolution of interacting proteins. BMC Syst. Biol. 1 (S-1) (2007)
John W. Pinney, John M. Starkovich, Peter Li, David L. Robertson
SHARKview: a tool for the visualization of systems biology data. BMC Syst. Biol. 1 (S-1) (2007)
Brian J. Holden, John W. Pinney, Simon C. Lovell, Grigoris D. Amoutzias, David L. Robertson
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network. BMC Bioinform. 8 (2007)
Alia BenKahla, David L. Robertson, Emmanuel Beaudoing, Jean-Michel Claverie
The Detection of Putative Recombinant Sequences Using BLAST. German Conference on Bioinformatics (2000)