Luiz M. R. Gadelha Jr.

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 20

Top Topics

Tandem Mass Spectrometry

Environmental Data

Gene Expression

Top Venues

Publications

Waqas Ahmed, Vamsi Krishna Kommineni, Birgitta König-Ries, Jitendra Gaikwad, Luiz M. R. Gadelha Jr., Sheeba Samuel
Evaluating the method reproducibility of deep learning models in the biodiversity domain. CoRR (2024)
Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto
HIHISIV: a database of gene expression in HIV and SIV host immune response. BMC Bioinform. 25 (1) (2024)
Luiz M. R. Gadelha Jr., Jan Eufinger
The German Human Genome-Phenome Archive in an International Context: Toward a Federated Infrastructure for Managing and Analyzing Genomics and Health Data. CoRDI (2023)
Mahnoor Zulfiqar, Luiz M. R. Gadelha Jr., Christoph Steinbeck, Maria Sorokina, Kristian Peters
MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry. J. Cheminformatics 15 (1) (2023)
Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña
Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas 26 (4) (2022)
Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries
Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. CoRR (2022)
Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries
Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. e-Science (2022)
Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff
ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA (2022)
Maria Luiza Mondelli, Sheeba Samuel, Birgitta König-Ries, Luiz M. R. Gadelha Jr.
Capturing and Semantically Describing Provenance to Tell the Story of R Scripts. e-Science (2021)
Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Eduardo Couto Dalcin, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano L. Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira
A survey of biodiversity informatics: Concepts, practices, and challenges. WIREs Data Mining Knowl. Discov. 11 (1) (2021)
Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos
BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. 107 (2020)
Maria Luiza Mondelli, Luiz M. R. Gadelha Jr., Artur Ziviani
O Que os Países escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo. Braz. J. Inf. Syst. 12 (3) (2019)
Marcia Chame, Helio J. C. Barbosa, Luiz M. R. Gadelha Jr., Douglas Adriano Augusto, Eduardo Krempser, Livia Abdalla
SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. J. Heal. Informatics Res. 3 (4) (2019)
Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.
Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. CoRR (2019)
Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.
Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. ER Workshops (2019)
Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos
Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. CCGRID (2019)
Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Artur Ziviani, Eduardo Couto Dalcin, Helen Michelle Affe, Marinez Ferreira de Siqueira, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Marcia Chame, Raquel Lopes Costa, Pedro Milet Meirelles, Fabiano L. Thompson
A Survey of e-Biodiversity: Concepts, Practices, and Challenges. CoRR (2018)
Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.
BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR (2018)
Andrea Sánchez-Tapia, Marinez Ferreira de Siqueira, Rafael Oliveira Lima, Felipe Sodré M. Barros, Guilherme M. Gall, Luiz M. R. Gadelha Jr., Luís Alexandre Estevão da Silva, Carla Osthoff
Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling. CARLA (2017)
Pedro Milet Meirelles, Luiz M. R. Gadelha Jr., Ronaldo Bastos Francini-Filho, Rodrigo Leão de Moura, Gilberto Menezes Amado-Filho, Alex Cardoso Bastos, Rodolfo Pinheiro da Rocha Paranhos, Carlos Eduardo Rezende, Jean Swings, Eduardo Siegle, Nils Edvin Asp Neto, Sigrid Neumann Leitão, Ricardo Coutinho, Marta Mattoso, Paulo S. Salomon, Rogério A. B. Valle, Renato Crespo Pereira, Ricardo Henrique Kruger, Cristiane Thompson, Fabiano L. Thompson
BaMBa: towards the integrated management of Brazilian marine environmental data. Database J. Biol. Databases Curation 2015 (2015)
Rocío Zorrilla, Maira Poltosi, Luiz M. R. Gadelha Jr., Fábio Porto, Ana Maria de Carvalho Moura, A. Dalto, Helena P. Lavrado, Yocie Yoneshigue-Valentin, M. Tenório, E. Xavier
Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research. Data Sci. J. 13 (2014)
Luiz M. R. Gadelha Jr., Marta Mattoso
Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. IPAW (2014)
Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster
Provenance traces of the swift parallel scripting system. EDBT/ICDT Workshops (2013)
Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster
MTCProv: a practical provenance query framework for many-task scientific computing. Distributed Parallel Databases 30 (5-6) (2012)
Luiz M. R. Gadelha Jr., Ben Clifford, Marta Mattoso, Michael Wilde, Ian T. Foster
Provenance management in Swift. Future Gener. Comput. Syst. 27 (6) (2011)
Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster
Provenance Query Patterns for Many-Task Scientific Computing. TaPP (2011)
Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster
Towards a Threat Model for Provenance in e-Science. IPAW (2010)
Luiz M. R. Gadelha Jr., Marta Mattoso
Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems. eScience (2008)
Sérgio Manuel Serra da Cruz, Fabrício Nogueira da Silva, Luiz M. R. Gadelha Jr., Maria Cláudia Reis Cavalcanti, Maria Luiza Machado Campos, Marta Mattoso
A Lightweight Middleware Monitor for Distributed Scientific Workflows. CCGRID (2008)
Luiz M. R. Gadelha Jr., Bruno Schulze
On the management of grid credentials. MGC (2007)
Luiz M. R. Gadelha Jr., Mauricio Ayala-Rincón
An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups. SCCC (2001)