Kary A. C. S. Ocaña

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 23

Top Topics

Future Directions

Scientific Workflows

Phylogenetic Trees

Scientific Data

Top Venues

Future Gener. Comput. Syst.

IPDPS Workshops

J. Inf. Data Manag.

Publications

Alexandre H. L. Porto, Micaella Coelho, Kary A. C. S. Ocaña, Carla Osthoff, Francieli Boito, Douglas de O. Cardoso
An Exploratory Study of Deep Learning for Predicting Computational Tasks Behavior in HPC Systems. SBAC-PADW (2023)
Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña
Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas 26 (4) (2022)
Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff
ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA (2022)
Lucas Tito, Cristina Motinha, Filipe Santiago, Kary A. C. S. Ocaña, Marcos V. N. Bedo, Daniel de Oliveira
Xi-DL: um Sistema de Gerência de Data Lake para Monitoramento de Dados da Saúde. SBBD (2020)
Thaylon Guedes, Lucas Bertelli Martins, Maria Luiza Furtuozo Falci, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso, Marcos V. N. Bedo, Daniel de Oliveira
Capturing and Analyzing Provenance from Spark-based Scientific Workflows with SAMbA-RaP. Future Gener. Comput. Syst. 112 (2020)
Thaylon Guedes, Leonardo Araújo de Jesus, Kary A. C. S. Ocaña, Lúcia M. A. Drummond, Daniel de Oliveira
Provenance-based fault tolerance technique recommendation for cloud-based scientific workflows: a practical approach. Clust. Comput. 23 (1) (2020)
Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos
BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. 107 (2020)
Yan Mendes, Victor Ströele, Daniel de Oliveira, Kary A. C. S. Ocaña
Análise Integrada de Grafos de Proveniência Heterogêneos por meio de uma Abordagem PolyStore. SBBD (2019)
Daniel de Oliveira, Eduardo Rodrigues Duarte Neto, Serafim Costa, Paulo Roberto Pessoa Amora, Asley Caldas, Marco Horta, Ana Maria de Fillippis, Kary A. C. S. Ocaña, Vânia Maria P. Vidal, Javam C. Machado
Um Estudo Comparativo de Mecanismos de Privacidade Diferencial sobre um Dataset de Ocorrências do ZIKV no Brasil. SBBD (2019)
Kary A. C. S. Ocaña, Thaylon Guedes, Daniel de Oliveira
ArrOW: Experiencing a Parallel Cloud-Based De Novo Assembler Workflow. IPDPS Workshops (2019)
Marcos Guerine, Murilo B. Stockinger, Isabel Rosseti, Luidi Gelabert Simonetti, Kary A. C. S. Ocaña, Alexandre Plastino, Daniel de Oliveira
A provenance-based heuristic for preserving results confidentiality in cloud-based scientific workflows. Future Gener. Comput. Syst. 97 (2019)
Kary A. C. S. Ocaña, Carla Osthoff, Micaella Coelho, Marcelo Galheigo, Isabela Canuto, Douglas E. M. de Oliveira, Daniel de Oliveira
Performance Evaluation of Parallel Inference of Large Phylogenetic Trees in Santos Dumont Supercomputer: A Practical Approach. CARLA (2019)
Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.
BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR (2018)
Patrick Valduriez, Marta Mattoso, Reza Akbarinia, Heraldo Borges, José J. Camata, Alvaro L. G. A. Coutinho, Daniel Gaspar, Noel Moreno Lemus, Ji Liu, Hermano Lustosa, Florent Masseglia, Fabrício Nogueira da Silva, Vítor Silva, Renan Souza, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Daniel de Oliveira, Esther Pacitti, Fábio Porto, Dennis E. Shasha
Scientific Data Analysis Using Data-Intensive Scalable Computing: The SciDISC Project. LADaS@VLDB (2018)
Isabel Rosseti, Kary A. C. S. Ocaña, Daniel de Oliveira
Towards preserving results confidentiality in cloud-based scientific workflows. WORKS@SC (2017)
Wellington Moreira de Oliveira, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo
Querying Provenance along with External Domain Data Using Prolog. J. Inf. Data Manag. 8 (1) (2017)
Anderson Marinho, Daniel de Oliveira, Eduardo S. Ogasawara, Vítor Silva, Kary A. C. S. Ocaña, Leonardo Murta, Vanessa Braganholo, Marta Mattoso
Deriving scientific workflows from algebraic experiment lines: A practical approach. Future Gener. Comput. Syst. 68 (2017)
Augusto Romeiro, Kary A. C. S. Ocaña, Marcos Kalinowski, Daniel de Oliveira
SciAgile: Aplicação de Metodologias Ágeis em Experimentos Científicos Baseados em Simulação. CIbSE (2017)
Vitor C. Neves, Daniel de Oliveira, Kary A. C. S. Ocaña, Vanessa Braganholo, Leonardo Murta
Managing Provenance of Implicit Data Flows in Scientific Experiments. ACM Trans. Internet Techn. 17 (4) (2017)
Gustavo Tallarida, Kary A. C. S. Ocaña, Aline Paes, Vanessa Braganholo, Daniel de Oliveira
Gerência de Incerteza em Bancos de Dados de Proveniência de Workflows de Bioinformática. SBBD (2016)
Wellington Moreira de Oliveira, Paolo Missier, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo
Analyzing Provenance Across Heterogeneous Provenance Graphs. IPAW (2016)
Leonardo S. Ramos, Kary A. C. S. Ocaña, Daniel Oliveira
Um Sistema de Informação para Gerência de Projetos Científicos baseados em Simulações Computacionais [An IS for Managing Scientific Projects]. SBSI (2016)
Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond
A Dynamic Cloud Dimensioning Approach for Parallel Scientific Workflows: a Case Study in the Comparative Genomics Domain. J. Grid Comput. 14 (3) (2016)
Marta Mattoso, Jonas Dias, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Flavio Costa, Felipe Horta, Vítor Silva, Daniel de Oliveira
Dynamic steering of HPC scientific workflows: A survey. Future Gener. Comput. Syst. 46 (2015)
Kary A. C. S. Ocaña, Vítor Silva, Daniel de Oliveira, Marta Mattoso
Data Analytics in Bioinformatics: Data Science in Practice for Genomics Analysis Workflows. e-Science (2015)
Rachel Castro, Renan Souza, Vítor Silva, Kary A. C. S. Ocaña, Daniel de Oliveira, Marta Mattoso
Uma Abordagem para Publicação de Dados de Proveniência de Workflows Científicos na Web Semântica. SBBD (Short Papers) (2015)
Wellington Moreira de Oliveira, Vitor C. Neves, Kary A. C. S. Ocaña, Leonardo Murta, Daniel de Oliveira, Vanessa Braganholo
Captura e Consulta a Dados de Proveniência Retrospectiva Implícita Intra-Atividade. SBBD (2014)
Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Marta Mattoso
Towards Supporting Provenance Gathering and Querying in Different Database Approaches. IPAW (2014)
Kary A. C. S. Ocaña, Silvia Benza, Daniel de Oliveira, Jonas Dias, Marta Mattoso
Exploring Large Scale Receptor-Ligand Pairs in Molecular Docking Workflows in HPC Clouds. IPDPS Workshops (2014)
Kary A. C. S. Ocaña, Daniel de Oliveira, Vítor Silva, Silvia Benza, Marta Mattoso
Exploiting the Parallel Execution of Homology Workflow Alternatives in HPC Compute Clouds. ICSOC Workshops (2014)
Rafaelli de C. Coutinho, Lúcia M. A. Drummond, Yuri Frota, Daniel de Oliveira, Kary A. C. S. Ocaña
Evaluating Grasp-based cloud dimensioning for comparative genomics: A practical approach. CLUSTER (2014)
Daniel de Oliveira, Flavio Costa, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso
Debugging Scientific Workflows with Provenance: Achievements and Lessons Learned. SBBD (2014)
Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, João Carlos de A. R. Gonçalves, Fernanda Araujo Baião, Marta Mattoso
Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows. Future Gener. Comput. Syst. 29 (7) (2013)
João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
Performance Analysis of Data Filtering in Scientific Workflows. J. Inf. Data Manag. 4 (1) (2013)
Daniel de Oliveira, Vitor Viana, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso
Dimensioning the virtual cluster for parallel scientific workflows in clouds. ScienceCloud@HPDC (2013)
Igor Dos Santos, Jonas Dias, Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso
Runtime Dynamic Structural Changes of Scientific Workflows in Clouds. UCC (2013)
Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
Capturing and querying workflow runtime provenance with PROV: a practical approach. EDBT/ICDT Workshops (2013)
Marta Mattoso, Kary A. C. S. Ocaña, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Vítor Silva, Daniel de Oliveira, Flavio Costa, Igor Araújo
User-steering of HPC workflows: state-of-the-art and future directions. SWEET@SIGMOD (2013)
Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
Designing a parallel cloud based comparative genomics workflow to improve phylogenetic analyses. Future Gener. Comput. Syst. 29 (8) (2013)
Julliano Trindade Pintas, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
SciLightning: A Cloud Provenance-Based Event Notification for Parallel Workflows. ICSOC Workshops (2013)
Felipe Horta, Vítor Silva, Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
Provenance traces from Chiron parallel workflow engine. EDBT/ICDT Workshops (2013)
Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
Handling Failures in Parallel Scientific Workflows Using Clouds. SC Companion (2012)
João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
Using Domain-Specific Data to Enhance Scientific Workflow Steering Queries. IPAW (2012)
João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso
Using Provenance Analyzers to Improve the Performance of Scientific Workflows in Cloud Environments. SBBD (Short Papers) (2012)
Felipe Horta, Jonas Dias, Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Marta Mattoso
Abstract: Using Provenance to Visualize Data from Large-Scale Experiments. SC Companion (2012)
Daniel de Oliveira, Kary A. C. S. Ocaña, Fernanda Araujo Baião, Marta Mattoso
A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific Workflows in Clouds. J. Grid Comput. 10 (3) (2012)
Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Fernanda Araujo Baião, Marta Mattoso
An adaptive parallel execution strategy for cloud-based scientific workflows. Concurr. Comput. Pract. Exp. 24 (13) (2012)
Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso
Enabling Re-executions of Parallel Scientific Workflows Using Runtime Provenance Data. IPAW (2012)
Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflow. eScience (2012)
Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow. BSB (2012)
Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Fernanda Araujo Baião, Marta Mattoso
A Performance Evaluation of X-Ray Crystallography Scientific Workflow Using SciCumulus. IEEE CLOUD (2011)
Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Alberto M. R. Dávila, Alexandre A. B. Lima, Marta Mattoso
SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes. BSB (2011)
Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso
Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific Workflow. eScience (2011)
Alberto M. R. Dávila, Pablo N. Mendes, Glauber Wagner, Diogo A. Tschoeke, Rafael R. C. Cuadrat, Felipe Liberman, Luciana Matos, Thiago S. Satake, Kary A. C. S. Ocaña, Omar Triana, Sérgio Manuel Serra da Cruz, Henrique C. L. Jucá, Juliano C. Cury, Fabrício Nogueira da Silva, Guilherme A. Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano P. Silva Jr., Christian M. Probst, Edmundo C. Grisard, Marco A. Krieger, Samuel Goldenberg, Maria Cláudia Reis Cavalcanti, Milton O. Moraes, Maria Luiza Machado Campos, Marta Mattoso
ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Res. 36 (Database-Issue) (2008)