Zhang Zhang

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 49

Top Topics

Association Studies

Gene Expression

Top Venues

Nucleic Acids Res.

Genom. Proteom. Bioinform.

Briefings Bioinform.

Publications

Zhang Zhang, Qin Zhang, Yang Jiao, Lin Lu, Lin Ma, Aihua Liu, Xiao Liu, Juan Zhao, Yajun Xue, Bing Wei, Mingxia Zhang, Ru Gao, Hong Zhao, Jie Lu, Fan Li, Yang Zhang, Yiming Wang, Lei Zhang, Fengwei Tian, Jie Hu, Xin Gou
Methodology and real-world applications of dynamic uncertain causality graph for clinical diagnosis with explainability and invariance. Artif. Intell. Rev. 57 (6) (2024)
Zhang Zhang, Qin Zhang, Yang Jiao, Lin Lu, Lin Ma, Aihua Liu, Xiao Liu, Juan Zhao, Yajun Xue, Bing Wei, Mingxia Zhang, Ru Gao, Hong Zhao, Jie Lu, Fan Li, Yang Zhang, Yiming Wang, Lei Zhang, Fengwei Tian, Jie Hu, Xin Gou
Methodology and Real-World Applications of Dynamic Uncertain Causality Graph for Clinical Diagnosis with Explainability and Invariance. CoRR (2024)
Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Yunfei Shang, Tong Jin, Yuansheng Zhang, Ming Chen, Zishan Wu, Yuan Chu, Rongqin Zhang, Sicheng Luo, Wei Jing, Dong Zou, Yiming Bao, Jing-Fa Xiao, Zhang Zhang
Cell Taxonomy: a curated repository of cell types with multifaceted characterization. Nucleic Acids Res. 51 (D1) (2023)
Zhang Zhang, Songnian Hu, Jun Yu
Toward a New Paradigm of Genomics Research - Celebration of the 20th Anniversary of Beijing Institute of Genomics. Genom. Proteom. Bioinform. 21 (5) (2023)
Siyu Pan, Hongen Kang, Xinxuan Liu, Shiqi Lin, Na Yuan, Zhang Zhang, Yiming Bao, Peilin Jia
Brain Catalog: a comprehensive resource for the genetic landscape of brain-related traits. Nucleic Acids Res. 51 (D1) (2023)
Lina Ma, Dong Zou, Lin Liu, Huma Shireen, Amir Ali Abbasi, Alex Bateman, Jing-Fa Xiao, Wenming Zhao, Yiming Bao, Zhang Zhang
Database Commons: A Catalog of Worldwide Biological Databases. Genom. Proteom. Bioinform. 21 (5) (2023)
Mochen Zhang, Wenting Zong, Dong Zou, Guoliang Wang, Wei Zhao, Fei Yang, Song Wu, Xinran Zhang, Xutong Guo, Yingke Ma, Zhuang Xiong, Zhang Zhang, Yiming Bao, Rujiao Li
MethBank 4.0: an updated database of DNA methylation across a variety of species. Nucleic Acids Res. 51 (D1) (2023)
Guangya Duan, Gangao Wu, Xiaoning Chen, Dongmei Tian, Zhaohua Li, Yanling Sun, Zhenglin Du, Lili Hao, Shuhui Song, Yuan Gao, Jing-Fa Xiao, Zhang Zhang, Yiming Bao, Bixia Tang, Wenming Zhao
HGD: an integrated homologous gene database across multiple species. Nucleic Acids Res. 51 (D1) (2023)
Xiaonan Liu, Dongmei Tian, Cuiping Li, Bixia Tang, Zhonghuang Wang, Rongqin Zhang, Yitong Pan, Yi Wang, Dong Zou, Zhang Zhang, Shuhui Song
GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals. Nucleic Acids Res. 51 (D1) (2023)
Lun Li, Bo Xu, Dongmei Tian, Anke Wang, Junwei Zhu, Cuiping Li, Na Li, Wei Zhao, Leisheng Shi, Yongbiao Xue, Zhang Zhang, Yiming Bao, Wenming Zhao, Shuhui Song
McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks. Briefings Bioinform. 24 (3) (2023)
Zhao Li, Lin Liu, Changrui Feng, Yuxin Qin, Jing-Fa Xiao, Zhang Zhang, Lina Ma
LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations. Nucleic Acids Res. 51 (D1) (2023)
Lihua Jia, Yang Li, Fangfang Huang, Yingru Jiang, Haoran Li, Zhizhan Wang, Tiantian Chen, Jiaming Li, Zhang Zhang, Wen Yao
LIRBase: a comprehensive database of long inverted repeats in eukaryotic genomes. Nucleic Acids Res. 50 (D1) (2022)
Zhuang Xiong, Fei Yang, Mengwei Li, Yingke Ma, Wei Zhao, Guoliang Wang, Zhaohua Li, Xinchang Zheng, Dong Zou, Wenting Zong, Hongen Kang, Yaokai Jia, Rujiao Li, Zhang Zhang, Yiming Bao
EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study. Nucleic Acids Res. 50 (D1) (2022)
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res. 50 (D1) (2022)
Yuansheng Zhang, Dong Zou, Tongtong Zhu, Tianyi Xu, Ming Chen, Guangyi Niu, Wenting Zong, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Yubin Sun, Shuang Zhai, Huanxin Chen, Wenming Zhao, Jing-Fa Xiao, Yiming Bao, Lili Hao, Zhang Zhang
Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. Nucleic Acids Res. 50 (D1) (2022)
Lin Liu, Yang Zhang, Guangyi Niu, Qianpeng Li, Zhao Li, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Tianyi Xu, Ruru Chen, Xufei Teng, Rongqin Zhang, Dong Zou, Lina Ma, Zhang Zhang
BrainBase: a curated knowledgebase for brain diseases. Nucleic Acids Res. 50 (D1) (2022)
Shuai Jiang, Qiang Du, Changrui Feng, Lina Ma, Zhang Zhang
CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Res. 50 (D1) (2022)
Lin Liu, Zhao Li, Chang Liu, Dong Zou, Qianpeng Li, Changrui Feng, Wei Jing, Sicheng Luo, Zhang Zhang, Lina Ma
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. Nucleic Acids Res. 50 (D1) (2022)
Zhang Zhang
KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-coding Sequences. Genom. Proteom. Bioinform. 20 (3) (2022)
Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang, Jian Sang, Xingjian Xu, Lili Hao, Zhaohua Li, Zheng Gong, Jing-Fa Xiao, Zhang Zhang, Wenming Zhao, Yiming Bao
Genome Warehouse: A Public Repository Housing Genome-scale Data. Genom. Proteom. Bioinform. 19 (4) (2021)
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guang-Hui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir A. Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res. 49 (Database-Issue) (2021)
Tingting Chen, Xu Chen, Sisi Zhang, Junwei Zhu, Bixia Tang, Anke Wang, Lili Dong, Zhewen Zhang, Caixia Yu, Yanling Sun, Lianjiang Chi, Huanxin Chen, Shuang Zhai, Yubin Sun, Li Lan, Xin Zhang, Jing-Fa Xiao, Yiming Bao, Zhang Zhang, Wenming Zhao
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. Genom. Proteom. Bioinform. 19 (4) (2021)
Zhao Li, Lin Liu, Shuai Jiang, Qianpeng Li, Changrui Feng, Qiang Du, Dong Zou, Jing-Fa Xiao, Zhang Zhang, Lina Ma
LncExpDB: an expression database of human long non-coding RNAs. Nucleic Acids Res. 49 (Database-Issue) (2021)
Cuiping Li, Dongmei Tian, Bixia Tang, Xiaonan Liu, Xufei Teng, Wenming Zhao, Zhang Zhang, Shuhui Song
Genome Variation Map: a worldwide collection of genome variations across multiple species. Nucleic Acids Res. 49 (Database-Issue) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jun Yan, Dong Zou, Chen Li, Zhang Zhang, Shuhui Song, Xiangfeng Wang
SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. Genom. Proteom. Bioinform. 18 (2) (2020)
Jian Sang, Dong Zou, Zhennan Wang, Fan Wang, Yuansheng Zhang, Lin Xia, Zhaohua Li, Lina Ma, Mengwei Li, Bingxiang Xu, Xiaonan Liu, Shuangyang Wu, Lin Liu, Guangyi Niu, Man Li, Yingfeng Luo, Songnian Hu, Lili Hao, Zhang Zhang
IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. Genom. Proteom. Bioinform. 18 (2) (2020)
Zhang Zhang, Shuhui Song, Jun Yu, Wenming Zhao, Jing-Fa Xiao, Yiming Bao
The Elements of Data Sharing. Genom. Proteom. Bioinform. 18 (1) (2020)
Zhonghai Li, Yang Zhang, Dong Zou, Yi Zhao, Hou-Ling Wang, Yi Zhang, Xinli Xia, Jingchu Luo, Hongwei Guo, Zhang Zhang
LSD 3.0: a comprehensive resource for the leaf senescence research community. Nucleic Acids Res. 48 (Database-Issue) (2020)
Zhuang Xiong, Mengwei Li, Fei Yang, Yingke Ma, Jian Sang, Rujiao Li, Zhaohua Li, Zhang Zhang, Yiming Bao
EWAS Data Hub: a resource of DNA methylation array data and metadata. Nucleic Acids Res. 48 (Database-Issue) (2020)
Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Jing-Fa Xiao, Zhang Zhang, Wenming Zhao, Yongbiao Xue, Yiming Bao
The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. Genom. Proteom. Bioinform. 18 (6) (2020)
Dongmei Tian, Pei Wang, Bixia Tang, Xufei Teng, Cuiping Li, Xiaonan Liu, Dong Zou, Shuhui Song, Zhang Zhang
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. Nucleic Acids Res. 48 (Database-Issue) (2020)
Xufei Teng, Qianpeng Li, Zhao Li, Yuansheng Zhang, Guangyi Niu, Jing-Fa Xiao, Jun Yu, Zhang Zhang, Shuhui Song
Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades. Genom. Proteom. Bioinform. 18 (6) (2020)
Yongbing Zhao, Jinyue Wang, Fang Liang, Yanxia Liu, Qi Wang, Hao Zhang, Meiye Jiang, Zhewen Zhang, Wenming Zhao, Yiming Bao, Zhang Zhang, Jiayan Wu, Yan W. Asmann, Rujiao Li, Jing-Fa Xiao
NucMap: a database of genome-wide nucleosome positioning map across species. Nucleic Acids Res. 47 (Database-Issue) (2019)
Mengwei Li, Dong Zou, Zhaohua Li, Ran Gao, Jian Sang, Yuansheng Zhang, Rujiao Li, Lin Xia, Tao Zhang, Guangyi Niu, Yiming Bao, Zhang Zhang
EWAS Atlas: a curated knowledgebase of epigenome-wide association studies. Nucleic Acids Res. 47 (Database-Issue) (2019)
Guangyu Wang, Hongyan Yin, Boyang Li, Chunlei Yu, Fan Wang, Xingjian Xu, Jiabao Cao, Yiming Bao, Liguo Wang, Amir A. Abbasi, Vladimir B. Bajic, Lina Ma, Zhang Zhang
Characterization and identification of long non-coding RNAs based on feature relationship. Bioinform. 35 (17) (2019)
Lina Ma, Jiabao Cao, Lin Liu, Qiang Du, Zhao Li, Dong Zou, Vladimir B. Bajic, Zhang Zhang
LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Res. 47 (Database-Issue) (2019)
Bixia Tang, Qing Zhou, Lili Dong, Wulue Li, Xiangquan Zhang, Li Lan, Shuang Zhai, Jing-Fa Xiao, Zhang Zhang, Yiming Bao, Ya-Ping Zhang, Guo-Dong Wang, Wenming Zhao
iDog: an integrated resource for domestic dogs and wild canids. Nucleic Acids Res. 47 (Database-Issue) (2019)
Man Li, Lin Xia, Yuansheng Zhang, Guangyi Niu, Mengwei Li, Pei Wang, Yang Zhang, Jian Sang, Dong Zou, Songnian Hu, Lili Hao, Zhang Zhang
Plant editosome database: a curated database of RNA editosome in plants. Nucleic Acids Res. 47 (Database-Issue) (2019)
Guangyi Niu, Dong Zou, Mengwei Li, Yuansheng Zhang, Jian Sang, Lin Xia, Man Li, Lin Liu, Jiabao Cao, Yang Zhang, Pei Wang, Songnian Hu, Lili Hao, Zhang Zhang
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. Nucleic Acids Res. 47 (Database-Issue) (2019)
Zhang Zhang, Jun Yu, Frank Eisenhaber, Xin Gao, Takashi Gojobori
In Memory of Vladimir B. Bajic (1952-2019). Genom. Proteom. Bioinform. 17 (5) (2019)
Hongyan Yin, Mengwei Li, Lin Xia, Chaozu He, Zhang Zhang
Computational determination of gene age and characterization of evolutionary dynamics in human. Briefings Bioinform. 20 (6) (2019)
Zhang Zhang, Yu Xue, Fangqing Zhao
Bioinformatics Commons: The Cornerstone of Life and Health Sciences. Genom. Proteom. Bioinform. 16 (4) (2018)
Jian Sang, Zhennan Wang, Man Li, Jiabao Cao, Guangyi Niu, Lin Xia, Dong Zou, Fan Wang, Xingjian Xu, Xiaojiao Han, Jinqi Fan, Ye Yang, Wanzhu Zuo, Yang Zhang, Wenming Zhao, Yiming Bao, Jing-Fa Xiao, Songnian Hu, Lili Hao, Zhang Zhang
ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. Nucleic Acids Res. 46 (Database-Issue) (2018)
Shuhui Song, Dongmei Tian, Cuiping Li, Bixia Tang, Lili Dong, Jing-Fa Xiao, Yiming Bao, Wenming Zhao, Hang He, Zhang Zhang
Genome Variation Map: a data repository of genome variations in BIG Data Center. Nucleic Acids Res. 46 (Database-Issue) (2018)
Rujiao Li, Fang Liang, Mengwei Li, Dong Zou, Shixiang Sun, Yongbing Zhao, Wenming Zhao, Yiming Bao, Jing-Fa Xiao, Zhang Zhang
MethBank 3.0: a database of DNA methylomes across a variety of species. Nucleic Acids Res. 46 (Database-Issue) (2018)
Shuhui Song, Dongmei Tian, Zhang Zhang, Songnian Hu, Jun Yu
Rice Genomics: over the Past Two Decades and into the Future. Genom. Proteom. Bioinform. 16 (6) (2018)
Xingjian Xu, Zhaohua Ji, Zhang Zhang
CloudPhylo: a fast and scalable tool for phylogeny reconstruction. Bioinform. 33 (3) (2017)
Yu Xue, Eric-Wubbo Lameijer, Kai Ye, Kunlin Zhang, Suhua Chang, Xiaoyue Wang, Jianmin Wu, Ge Gao, Fangqing Zhao, Jian Li, Chunsheng Han, Shuhua Xu, Jing-Fa Xiao, Xuerui Yang, Xiaomin Ying, Xuegong Zhang, Wei-Hua Chen, Yun Liu, Zhang Zhang, Kun Huang, Jun Yu
Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. 14 (5) (2016)
Lina Ma, Ang Li, Dong Zou, Xingjian Xu, Lin Xia, Jun Yu, Vladimir B. Bajic, Zhang Zhang
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res. 43 (Database-Issue) (2015)
Dong Zou, Lina Ma, Jun Yu, Zhang Zhang
Biological Databases for Human Research. Genom. Proteom. Bioinform. 13 (1) (2015)
Dong Zou, Shixiang Sun, Rujiao Li, Jiang Liu, Jing Zhang, Zhang Zhang
MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data. Nucleic Acids Res. 43 (Database-Issue) (2015)
Zhang Zhang, Jian Sang, Lina Ma, Gang Wu, Hao Wu, Dawei Huang, Dong Zou, Siqi Liu, Ang Li, Lili Hao, Ming Tian, Chao Xu, Xumin Wang, Jiayan Wu, Jing-Fa Xiao, Lin Dai, Ling-Ling Chen, Songnian Hu, Jun Yu
RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Jiayan Wu, Jing-Fa Xiao, Zhang Zhang, Xumin Wang, Songnian Hu, Jun Yu
Ribogenomics: the Science and Knowledge of RNA. Genom. Proteom. Bioinform. 12 (2) (2014)
Yongbing Zhao, Xinmiao Jia, Junhui Yang, Yunchao Ling, Zhang Zhang, Jun Yu, Jiayan Wu, Jing-Fa Xiao
PanGP: A tool for quickly analyzing bacterial pan-genome profile. Bioinform. 30 (9) (2014)
Lin Dai, Ming Tian, Jiayan Wu, Jing-Fa Xiao, Xumin Wang, Jeffrey P. Townsend, Zhang Zhang
AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinform. 29 (14) (2013)
Zhang Zhang, Jun Yu
Does the Genetic Code Have A Eukaryotic Origin? Genom. Proteom. Bioinform. 11 (1) (2013)
Peng Cui, Feng Ding, Qiang Lin, Lingfang Zhang, Ang Li, Zhang Zhang, Songnian Hu, Jun Yu
Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. Genom. Proteom. Bioinform. 10 (1) (2012)
Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang, Songnian Hu, Jun Yu
Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. Genom. Proteom. Bioinform. 10 (4) (2012)
Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding, Chengqi Xin, Zhang Zhang, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu
Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. Genom. Proteom. Bioinform. 10 (2) (2012)
Zhang Zhang, Jun Li, Peng Cui, Feng Ding, Ang Li, Jeffrey P. Townsend, Jun Yu
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. BMC Bioinform. 13 (2012)
Zhang Zhang, Jun Yu
The Pendulum Model for Genome Compositional Dynamics: from the Four Nucleotides to the Twenty Amino Acids. Genom. Proteom. Bioinform. 10 (4) (2012)
Zhang Zhang, Jun Yu
On the Organizational Dynamics of the Genetic Code. Genom. Proteom. Bioinform. 9 (1-2) (2011)
Zhang Zhang, Francesc López-Giráldez, Jeffrey P. Townsend
LOX: inferring Level Of eXpression from diverse methods of census sequencing. Bioinform. 26 (15) (2010)
Dapeng Wang, Yubin Zhang, Zhang Zhang, Jiang Zhu, Jun Yu
KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies. Genom. Proteom. Bioinform. 8 (1) (2010)
Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend
Bringing Web 2.0 to bioinformatics. Briefings Bioinform. 10 (1) (2009)
Zhang Zhang, Jeffrey P. Townsend
Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences. PLoS Comput. Biol. 5 (6) (2009)
Hongkun Zheng, Junjie Shi, Xiaodong Fang, Yuan Li, Søren Vang, Wei Fan, Junyi Wang, Zhang Zhang, Wen Wang, Karsten Kristiansen, Jun Wang
FGF: A web tool for Fishing Gene Family in a whole genome database. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Zhang Zhang, Jun Yu
Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates. Genom. Proteom. Bioinform. 4 (3) (2006)
Zhang Zhang, Jun Li, Xiao-Qian Zhao, Jun Wang, Gane Ka-Shu Wong, Jun Yu
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging. Genom. Proteom. Bioinform. 4 (4) (2006)
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34 (Database-Issue) (2006)