Wei-Mou Zheng

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 12

Top Topics

Protein Structure Prediction

Protein Structure

Monte Carlo Sampling

Top Venues

J. Comput. Biol.

Publications

Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms. Genom. Proteom. Bioinform. 21 (5) (2023)
Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu
Accurate and efficient protein sequence design through learning concise local environment of residues. Bioinform. 39 (3) (2023)
Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs. J. Comput. Biol. 29 (2) (2022)
Fusong Ju, Jianwei Zhu, Qi Zhang, Guozheng Wei, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction. Bioinform. 38 (4) (2022)
Qi Zhang, Jianwei Zhu, Fusong Ju, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
ISSEC: inferring contacts among protein secondary structure elements using deep object detection. BMC Bioinform. 21 (1) (2020)
Chao Wang, Yi Wei, Haicang Zhang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling. BMC Bioinform. (3) (2019)
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. BMC Bioinform. 20 (1) (2019)
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. BMC Bioinform. 20 (1) (2019)
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Shiwei Sun, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning. CoRR (2018)
Hai'e Gong, Haicang Zhang, Jianwei Zhu, Chao Wang, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Improving prediction of burial state of residues by exploiting correlation among residues. BMC Bioinform. 18 (S-3) (2017)
Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts. Bioinform. 33 (23) (2017)
Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32 (3) (2016)
Hai-Jun Zhou, Wei-Mou Zheng
Loop-corrected belief propagation for lattice spin models. CoRR (2015)
Jianfeng Zhu, Wei-Mou Zheng
Self-organizing approach for meta-genomes. Comput. Biol. Chem. 53 (2014)
Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu
Incorporating Ab Initio energy into threading approaches for protein structure prediction. BMC Bioinform. 12 (S-1) (2011)
Gao Shan, Wei-Mou Zheng
Counting of oligomers in Sequences Generated by Markov Chains for DNA Motif Discovery. J. Bioinform. Comput. Biol. 7 (1) (2009)
Sheng Wang, Wei-Mou Zheng
ClEPaps: Fast Pair Alignment of protein Structures Based on conformational Letters. J. Bioinform. Comput. Biol. 6 (2) (2008)
Wei-Mou Zheng
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures. ISBRA (2008)
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Ka-Shu Wong, Jun Wang
). BMC Bioinform. 8 (2007)
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34 (Database-Issue) (2006)
Xin Liu, Wei-Mou Zheng
An Amino Acid Substitution Matrix for Protein Conformation Identification. J. Bioinform. Comput. Biol. 4 (3) (2006)
Ge Gao, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Wei-Mou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo
DRTF: a database of rice transcription factors. Bioinform. 22 (10) (2006)
Heng Li, Jin-Song Liu, Zhao Xu, Jiao Jin, Lin Fang, Lei Gao, Yu-Dong Li, Zi-Xing Xing, Shao-Gen Gao, Tao Liu, Hai-Hong Li, Yan Li, Li-Jun Fang, Hui-Min Xie, Wei-Mou Zheng, Bailin Hao
Test Data Sets and Evaluation of Gene Prediction Programs on the Rice Genome. J. Comput. Sci. Technol. 20 (4) (2005)
Wei-Mou Zheng, Xin Liu
A Protein Structural Alphabet and Its Substitution Matrix CLESUM. Trans. Comp. Sys. Biology 2 (2005)
Wei-Mou Zheng
Relation between weight matrix and substitution matrix: motif search by similarity. Bioinform. 21 (7) (2005)
Wei-Mou Zheng
Protein secondary structure prediction by combining hidden Markov models and sliding window scores. Int. J. Bioinform. Res. Appl. 1 (4) (2005)
Wei-Mou Zheng
Clustering of Amino Acids for Protein Secondary Structure Prediction. J. Bioinform. Comput. Biol. 2 (2) (2004)
Xin Liu, Li-Mei Zhang, Wei-Mou Zheng
Prediction of Protein Secondary Structure Based on Residue Pairs. J. Bioinform. Comput. Biol. 2 (2) (2004)