Mingfu Shao

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 23

Top Topics

Sequenced Genomes

Escherichia Coli

Top Venues

J. Comput. Biol.

Publications

Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao
Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads. WABI (2024)
Tasfia Zahin, Qian Shi, Xiaofei Carl Zang, Mingfu Shao
Accurate Assembly of Circular RNAs with TERRACE. RECOMB (2024)
Xiang Li, Mingfu Shao
On de novo Bridging Paired-end RNA-seq Data. BCB (2023)
Qimin Zhang, Mingfu Shao
Transcript assembly and annotations: Bias and adjustment. PLoS Comput. Biol. 19 (12) (2023)
Xiang Li, Mingfu Shao
On de novo Bridging Paired-end RNA-seq Data. CoRR (2023)
Ke Chen, Mingfu Shao
Locality-sensitive bucketing functions for the edit distance. Algorithms Mol. Biol. 18 (1) (2023)
Leran Ma, Ke Chen, Mingfu Shao
-mers with the Edit Distance. BCB (2023)
Xiang Li, Qian Shi, Ke Chen, Mingfu Shao
Seeding with minimized subsequence. Bioinform. 39 (Supplement-1) (2023)
Leran Ma, Ke Chen, Mingfu Shao
On the Maximal Independent Sets of k-mers with the Edit Distance. CoRR (2023)
Qimin Zhang, Qian Shi, Mingfu Shao
Accurate assembly of multi-end RNA-seq data with Scallop2. Nat. Comput. Sci. 2 (3) (2022)
Ke Chen, Mingfu Shao
Locality-Sensitive Bucketing Functions for the Edit Distance. WABI (2022)
Ke Chen, Mingfu Shao
Locality-sensitive bucketing functions for the edit distance. CoRR (2022)
Hongyi Xin, Mingfu Shao, Carl Kingsford
Context-aware seeds for read mapping. Algorithms Mol. Biol. 15 (1) (2020)
Mingfu Shao, Carl Kingsford
Theory and A Heuristic for the Minimum Path Flow Decomposition Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (2) (2019)
Hongyi Xin, Mingfu Shao, Carl Kingsford
Context-Aware Seeds for Read Mapping. WABI (2019)
Mingfu Shao, Bernard M. E. Moret
On Computing Breakpoint Distances for Genomes with Duplicate Genes. J. Comput. Biol. 24 (6) (2017)
Mingfu Shao, Jianzhu Ma, Sheng Wang
DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields. Bioinform. 33 (14) (2017)
Mingfu Shao, Bernard M. E. Moret
On Computing Breakpoint Distances for Genomes with Duplicate Genes. RECOMB (2016)
Mingfu Shao, Bernard M. E. Moret
A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. J. Comput. Biol. 23 (5) (2016)
Nishanth Ulhas Nair, Laura Hunter, Mingfu Shao, Paulina Grnarova, Yu Lin, Philipp Bucher, Bernard M. E. Moret
A maximum-likelihood approach for building cell-type trees by lifting. BMC Genom. 17 (S-1) (2016)
Mingfu Shao, Bernard M. E. Moret
Comparing genomes with rearrangements and segmental duplications. Bioinform. 31 (12) (2015)
Mingfu Shao, Bernard M. E. Moret
A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. RECOMB (2015)
Mingfu Shao, Yu Lin, Bernard M. E. Moret
An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes. J. Comput. Biol. 22 (5) (2015)
Mingfu Shao, Yu Lin, Bernard M. E. Moret
An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes. RECOMB (2014)
Mingfu Shao, Bernard M. E. Moret
On the DCJ Median Problem. CPM (2014)
Mingfu Shao, Yu Lin, Bernard M. E. Moret
Sorting genomes with rearrangements and segmental duplications through trajectory graphs. BMC Bioinform. 14 (S-15) (2013)
Mingfu Shao, Yu Lin
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion. BMC Bioinform. 13 (S-19) (2012)
Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu
Incorporating Ab Initio energy into threading approaches for protein structure prediction. BMC Bioinform. 12 (S-1) (2011)