Hongyi Xin

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 13

Top Topics

High Throughput Sequencing

Gaussian Filtering

Top Venues

Publications

Pengcheng Xu, Jinpu Cai, Yulin Gao, Ziqi Rong, Hongyi Xin
MIRACLE: Multi-task Learning based Interpretable Regulation of Autoimmune Diseases through Common Latent Epigenetics. CoRR (2023)
Jieli Zhou, Baoyu Jing, Zeya Wang, Hongyi Xin, Hanghang Tong
SODA: Detecting COVID-19 in Chest X-Rays With Semi-Supervised Open Set Domain Adaptation. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (5) (2022)
Yiran Shan, Qian Zhang, Wenbo Guo, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu
TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics. Genom. Proteom. Bioinform. 20 (5) (2022)
Qiuyu Lian, Hongyi Xin, Jianzhu Ma, Liza Konnikova, Wei Chen, Jin Gu, Kong Chen
Artificial-cell-type aware cell-type classification in CITE-seq. Bioinform. 36 (Supplement-1) (2020)
Hongyi Xin, Mingfu Shao, Carl Kingsford
Context-aware seeds for read mapping. Algorithms Mol. Biol. 15 (1) (2020)
Qi Yan, Daniel E. Weeks, Hongyi Xin, Anand Swaroop, Emily Y. Chew, Heng Huang, Ying Ding, Wei Chen
Deep-learning-based prediction of late age-related macular degeneration progression. Nat. Mach. Intell. 2 (2) (2020)
K. R. Jayaram, Anshul Gandhi, Hongyi Xin, Shu Tao
Adaptively Accelerating Map-Reduce/Spark with GPUs: A Case Study. ICAC (2019)
Hongyi Xin, Mingfu Shao, Carl Kingsford
Context-Aware Seeds for Read Mapping. WABI (2019)
Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies. BMC Genom. 19 (S2) (2018)
Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu
GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies. CoRR (2017)
Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, Can Alkan
GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping. Bioinform. 33 (21) (2017)
Mohammed Alser, Hasan Hassan, Hongyi Xin, Oguz Ergin, Onur Mutlu, Can Alkan
GateKeeper: Enabling Fast Pre-Alignment in DNA Short Read Mapping with a New Streaming Accelerator Architecture. CoRR (2016)
Hongyi Xin, Sunny Nahar, Richard Zhu, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu
Optimal seed solver: optimizing seed selection in read mapping. Bioinform. 32 (11) (2016)
Hongyi Xin, Richard Zhu, Sunny Nahar, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu
Optimal Seed Solver: Optimizing Seed Selection in Read Mapping. CoRR (2015)
Hongyi Xin, John Greth, John Emmons, Gennady Pekhimenko, Carl Kingsford, Can Alkan, Onur Mutlu
Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping. Bioinform. 31 (10) (2015)
Vivek Seshadri, Samihan Yedkar, Hongyi Xin, Onur Mutlu, Phillip B. Gibbons, Michael A. Kozuch, Todd C. Mowry
Mitigating Prefetcher-Caused Pollution Using Informed Caching Policies for Prefetched Blocks. ACM Trans. Archit. Code Optim. 11 (4) (2014)
Gennady Pekhimenko, Vivek Seshadri, Yoongu Kim, Hongyi Xin, Onur Mutlu, Phillip B. Gibbons, Michael A. Kozuch, Todd C. Mowry
Linearly compressed pages: a low-complexity, low-latency main memory compression framework. MICRO (2013)
Chuanjun Zhang, Glenn G. Ko, Jungwook Choi, Shang-nien Tsai, Minje Kim, Abner Guzmán-Rivera, Rob A. Rutenbar, Paris Smaragdis, Mi Sun Park, Vijaykrishnan Narayanan, Hongyi Xin, Onur Mutlu, Bin Li, Li Zhao, Mei Chen
EMERALD: Characterization of emerging applications and algorithms for low-power devices. ISPASS (2013)
Hongyi Xin, Donghyuk Lee, Farhad Hormozdiari, Samihan Yedkar, Onur Mutlu, Can Alkan
Accelerating read mapping with FastHASH. BMC Genom. 14 (S-1) (2013)
Joseph L. Greathouse, Hongyi Xin, Yixin Luo, Todd M. Austin
A case for unlimited watchpoints. ASPLOS (2012)