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Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.
Hongyi Xin
John Greth
John Emmons
Gennady Pekhimenko
Carl Kingsford
Can Alkan
Onur Mutlu
Published in:
Bioinform. (2015)
Keyphrases
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hamming distance
distance measure
binary strings
massively parallel
binary codes
parallel algorithm
binary representation
pattern matching
neighborhood structure
data sets
image processing
reinforcement learning