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Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping.

Hongyi XinJohn GrethJohn EmmonsGennady PekhimenkoCarl KingsfordCan AlkanOnur Mutlu
Published in: Bioinform. (2015)
Keyphrases
  • hamming distance
  • distance measure
  • binary strings
  • massively parallel
  • binary codes
  • parallel algorithm
  • binary representation
  • pattern matching
  • neighborhood structure
  • data sets
  • image processing
  • reinforcement learning