GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies.
Jeremie S. KimDamla Senol CaliHongyi XinDonghyuk LeeSaugata GhoseMohammed AlserHasan HassanOguz ErginCan AlkanOnur MutluPublished in: CoRR (2017)
Keyphrases
- filtering algorithm
- filtering method
- filtering process
- median filter
- image filtering
- computational power
- nonlinear filters
- pre filtering
- real time
- information processing
- random access
- filtering scheme
- nonlocal means
- noise removal
- vessel enhancement
- high throughput sequencing
- memory management
- data mining
- linear filters
- adaptive filtering
- data processing
- memory requirements
- gaussian filter
- gaussian filtering
- dna computing
- processing elements
- genome wide
- stack filters
- read write
- high pass
- dna sequences
- noise detection
- linear filtering
- main memory
- bandpass
- email spam
- frequency domain
- reference genome