An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes.
Mingfu ShaoYu LinBernard M. E. MoretPublished in: RECOMB (2014)
Keyphrases
- sequenced genomes
- genomic sequences
- genomic data
- comparative genomics
- regulatory elements
- gene clusters
- sequence data
- genome sequences
- gene expression
- protein coding regions
- escherichia coli
- microarray data
- dna sequences
- evolutionary history
- horizontal gene transfer
- coding regions
- human genome
- comparative analysis
- gene selection
- distance measure
- distance function
- gene expression data
- phylogenetic analysis
- genome scale
- sequence alignment
- gene sets
- gene regulatory networks
- microarray gene expression data
- biological processes
- reverse engineering
- integer programming
- gene expression analysis
- branch and bound algorithm
- experimental conditions
- sequence analysis
- gene expression profiles