Kang Ning

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 17

Top Topics

Protein Structure Prediction

Pattern Detection

Top Venues

Genom. Proteom. Bioinform.

Briefings Bioinform.

Publications

Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui
ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Wei Xu, Teng Wang, Nan Wang, Haohong Zhang, Yuguo Zha, Lei Ji, Yuwen Chu, Kang Ning
Artificial intelligence-enabled microbiome-based diagnosis models for a broad spectrum of cancer types. Briefings Bioinform. 24 (3) (2023)
Haohong Zhang, Hui Chong, Qingyang Yu, Yuguo Zha, Mingyue Cheng, Kang Ning
Tracing human life trajectory using gut microbial communities by context-aware deep learning. Briefings Bioinform. 24 (1) (2023)
Yuguo Zha, Hui Chong, Pengshuo Yang, Kang Ning
Microbial Dark Matter: from Discovery to Applications. Genom. Proteom. Bioinform. 20 (5) (2022)
Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning
EXPERT: transfer learning-enabled context-aware microbial community classification. Briefings Bioinform. 23 (6) (2022)
Yuguo Zha, Kang Ning
Ontology-aware neural network: a general framework for pattern mining from microbiome data. Briefings Bioinform. 23 (2) (2022)
Tao Bai, Xue Zhu, Xiang Zhou, Denise Grathwohl, Pengshuo Yang, Yuguo Zha, Yu Jin, Hui Chong, Qingyang Yu, Nora Isberner, Dongke Wang, Lei Zhang, K. Martin Kortüm, Jun Song, Leo Rasche, Hermann Einsele, Kang Ning, Xiaohua Hou
Reliable and Interpretable Mortality Prediction With Strong Foresight in COVID-19 Patients: An International Study From China and Germany. Frontiers Artif. Intell. 4 (2021)
Mo Zhu, Kai Kang, Kang Ning
Meta-Prism: Ultra-fast and highly accurate microbial community structure search utilizing dual indexing and parallel computation. Briefings Bioinform. 22 (1) (2021)
Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning, Xuefeng Cui
Hydrogen bonds meet self-attention: all you need for protein structure embedding. BIBM (2021)
Wang-Lin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long
Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock. Genom. Proteom. Bioinform. 18 (6) (2020)
Maozhen Han, Melissa Dsouza, Chunyu Zhou, Hongjun Li, Junqian Zhang, Chaoyun Chen, Qi Yao, Chaofang Zhong, Hao Zhou, Jack A. Gilbert, Zhi Wang, Kang Ning
Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. Genom. Proteom. Bioinform. 17 (1) (2019)
Mingyue Cheng, Kang Ning
Stereotypes About Enterotype: the Old and New Ideas. Genom. Proteom. Bioinform. 17 (1) (2019)
Pengshuo Yang, Shaojun Yu, Lin Cheng, Kang Ning
Meta-network: optimized species-species network analysis for microbial communities. BMC Genom. 20 (S2) (2019)
Chongyang Tan, Wei Cui, Xinping Cui, Kang Ning
Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling. Bioinform. 35 (10) (2019)
Kang Ning, Yigang Tong
The Fast Track for Microbiome Research. Genom. Proteom. Bioinform. 17 (1) (2019)
Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32 (3) (2016)
Gabriel H. Murillo, Na You, Xiaoquan Su, Wei Cui, Muredach P. Reilly, Mingyao Li, Kang Ning, Xinping Cui
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data. Bioinform. 32 (10) (2016)
Xiaoquan Su, Xiaojun Wang, Gongchao Jing, Shi Huang, Jian Xu, Kang Ning
Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats. Quant. Biol. 3 (1) (2015)
Shiwei Sun, Xuetao Wang, Xin Gao, Lihui Ren, Xiaoquan Su, Dongbo Bu, Kang Ning
Condensing Raman spectrum for single-cell phenotype analysis. BMC Bioinform. 16 (S18) (2015)
Houjin Zhang, Kang Ning
The Tara Oceans Project: New Opportunities and Greater Challenges Ahead. Genom. Proteom. Bioinform. 13 (5) (2015)
Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning
Microbial community pattern detection in human body habitats via ensemble clustering framework. BMC Syst. Biol. 8 (S-4) (2014)
Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning
Microbial community pattern detection in human body habitats via ensemble clustering framework. CoRR (2014)
Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai, Kang Ning
DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan. Genom. Proteom. Bioinform. 12 (3) (2014)
Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning
Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data. Genom. Proteom. Bioinform. 12 (1) (2014)
Xiaoquan Su, Xuetao Wang, Gongchao Jing, Kang Ning
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU. Bioinform. 30 (7) (2014)
Kang Ning, Kwok Pui Choi
Systematic assessment of the expected length, variance and distribution of Longest Common Subsequences. CoRR (2013)
Xiaoquan Su, Jian Xu, Kang Ning
Parallel-META: efficient metagenomic data analysis based on high-performance computation. BMC Syst. Biol. 6 (S-1) (2012)
Xiaoquan Su, Jian Xu, Kang Ning
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data. Bioinform. 28 (19) (2012)
Wei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning
A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data. ISB (2012)
Na You, Gabriel H. Murillo, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, Xinping Cui
SNP calling using genotype model selection on high-throughput sequencing data. Bioinform. 28 (5) (2012)
Kang Ning, Hon Wai Leong
The multiple sequence sets: problem and heuristic algorithms. J. Comb. Optim. 22 (4) (2011)
Kang Ning, Hoong Kee Ng, Hon Wai Leong
Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences. Int. J. Data Min. Bioinform. 5 (6) (2011)
Xiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning
An Open-source Collaboration Environment for Metagenomics Research. eScience (2011)
Kang Ning, Alexey I. Nesvizhskii
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment. BMC Bioinform. 11 (S-11) (2010)
Kang Ning
Multiple oligo nucleotide arrays: Methods to reduce manufacture time and cost. CoRR (2010)
Sriganesh Srihari, Kang Ning, Hon Wai Leong
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure. BMC Bioinform. 11 (2010)
Kang Ning, Hoong Kee Ng, Sriganesh Srihari, Hon Wai Leong, Alexey I. Nesvizhskii
Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. BMC Bioinform. 11 (2010)
Kang Ning
Deposition and extension approach to find longest common subsequence for thousands of long sequences. Comput. Biol. Chem. 34 (3) (2010)
Kang Ning
A Pseudo DNA Cryptography Method CoRR (2009)
Kang Ning
A Deposition and Post Processing Approach for the Longest Common Subsequence Problem CoRR (2009)
Kang Ning, Hon Wai Leong
The Distribution and Deposition Algorithm for Multiple Sequences Sets CoRR (2009)
Kang Ning, Hoong Kee Ng, Hon Wai Leong
Analysis of the Relationships among Longest Common Subsequences, Shortest Common Supersequences and Patterns and its application on Pattern Discovery in Biological Sequences CoRR (2009)
Sriganesh Srihari, Hoong Kee Ng, Kang Ning, Hon Wai Leong
Detecting hubs and quasi cliques in scale-free networks. ICPR (2008)
Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong
Using Indirect protein-protein Interactions for protein Complex Prediction. J. Bioinform. Comput. Biol. 6 (3) (2008)
Kang Ning, Nan Ye, Hon Wai Leong
peptide Sequencing: Improving Efficiency and Accuracy. J. Bioinform. Comput. Biol. 6 (3) (2008)
Kang Ning, Ket Fah Chong, Hon Wai Leong
De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags. APBC (2007)
Hoong Kee Ng, Kang Ning, Hon Wai Leong
A New Approach for Similarity Queries of Biological Sequences in Databases. PAKDD (2007)
Kang Ning, Hoong Kee Ng, Hon Wai Leong
Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences. BIBE (2006)
Kang Ning, Hon Wai Leong
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm. BMC Bioinform. 7 (S-4) (2006)
Kang Ning, Ket Fah Chong, Hon Wai Leong
A Database Search Algorithm for Identification of Peptides with Multiple Charges Using Tandem Mass Spectrometry. BioDM (2006)
Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC (2006)
Kang Ning, Hon Nian Chua
Automated Identification of Protein Classification and Detection of Annotation Errors in Protein Databases Using Statistical Approaches. KDLL (2006)
Kang Ning, Hon Wai Leong
Towards a Better Solution to the Shortest Common Supersequence Problem: A Post. IMSCCS (1) (2006)
Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinform. Comput. Biol. 4 (6) (2006)