Luís Pedro Coelho

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 5

Top Topics

Microscopy Images

Transfer Learning

Escherichia Coli

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Rémi Gschwind, Svetlana Ugarcina perovic, Maja Weiss, Marie Petitjean, Julie Lao, Luís Pedro Coelho, Etienne Ruppé
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics. Nucleic Acids Res. 51 (W1) (2023)
Shaojun Pan, Xing-Ming Zhao, Luís Pedro Coelho
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. Bioinform. 39 (Supplement-1) (2023)
Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning
EXPERT: transfer learning-enabled context-aware microbial community classification. Briefings Bioinform. 23 (6) (2022)
Daniel R. Mende, Ivica Letunic, Oleksandr M. Maistrenko, Thomas S. B. Schmidt, Alessio Milanese, Lucas Paoli, Ana Hernández-Plaza, Askarbek N. Orakov, Sofia K. Forslund, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Luís Pedro Coelho, Peer Bork
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. Nucleic Acids Res. 48 (Database-Issue) (2020)
Jens Roat Kultima, Luís Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S. Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork
MOCAT2: a metagenomic assembly, annotation and profiling framework. Bioinform. 32 (16) (2016)
Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images. Bioinform. 31 (14) (2015)
Luís Pedro Coelho, Joshua D. Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, Robert F. Murphy
Determining the subcellular location of new proteins from microscope images using local features. Bioinform. 29 (18) (2013)
Luís Pedro Coelho
Mahotas: Open source software for scriptable computer vision CoRR (2012)
Amr Ahmed, Andrew Arnold, Luís Pedro Coelho, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy
Structured literature image finder: Parsing text and figures in biomedical literature. J. Web Semant. 8 (2-3) (2010)
Luís Pedro Coelho, Tao Peng, Robert F. Murphy
Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing. Bioinform. 26 (12) (2010)
Luís Pedro Coelho, Aabid Shariff, Robert F. Murphy
Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms. ISBI (2009)
Luís Pedro Coelho, Amr Ahmed, Andrew Arnold, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy
Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature. BioLINK@ISMB/ECCB (2008)
Luís Pedro Coelho, Estelle Glory-Afshar, Joshua D. Kangas, Shannon Quinn, Aabid Shariff, Robert F. Murphy
Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns. BioLINK@ISMB/ECCB (2008)
Luís Pedro Coelho, Robert F. Murphy
Identifying Subcellular Locations from Images of Unknown Resolution. BIRD (2008)
Amina Chebira, Luís Pedro Coelho, Aliaksei Sandryhaila, Stephen Lin, William G. Jenkinson, Jeremiah MacSleyne, Christopher Hoffman, Philipp Cuadra, Charles Jackson, Markus Püschel, Jelena Kovacevic
An Adaptive Multiresolution Approach to Fingerprint Recognition. ICIP (1) (2007)
Luís Pedro Coelho, Arlindo L. Oliveira
Dotted Suffix Trees A Structure for Approximate Text Indexing. SPIRE (2006)