Counting of oligomers in Sequences Generated by Markov Chains for DNA Motif Discovery.
Gao ShanWei-Mou ZhengPublished in: J. Bioinform. Comput. Biol. (2009)
Keyphrases
- markov chain
- motif discovery
- biological sequences
- recurring patterns
- sequence analysis
- dna sequences
- binding sites
- sequence data
- transition probabilities
- state space
- sequence databases
- computational biology
- pattern discovery
- protein sequences
- probabilistic automata
- multiobjective optimization
- random walk
- biological data
- molecular biology
- genomic sequences
- sequence alignment
- hidden markov models
- transcription factor binding sites
- data mining tasks
- sequential patterns
- learning algorithm
- data mining algorithms
- transcription factors
- similarity search
- natural language processing
- dynamic programming
- similarity measure