Heng Li

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 7

Top Topics

Assembly Process

Tandem Mass Spectrometry

Top Venues

Publications

Haowen Zhang, Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Heng Li, Srinivas Aluru
Real-time mapping of nanopore raw signals. Bioinform. 37 (Supplement) (2021)
Heng Li
New strategies to improve minimap2 alignment accuracy. Bioinform. 37 (23) (2021)
Heng Li, Jiazhen Rong
Bedtk: finding interval overlap with implicit interval tree. Bioinform. 37 (9) (2021)
Shilpa Garg, John Aach, Heng Li, Isaac Sebenius, Richard Durbin, George M. Church
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. Bioinform. 36 (8) (2020)
Heng Li
Identifying centromeric satellites with dna-brnn. Bioinform. 35 (21) (2019)
Heng Li
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinform. 32 (14) (2016)
Heng Li
BGT: efficient and flexible genotype query across many samples. Bioinform. 32 (4) (2016)
Heng Li
BFC: correcting Illumina sequencing errors. Bioinform. 31 (17) (2015)
Heng Li
FermiKit: assembly-based variant calling for Illumina resequencing data. Bioinform. 31 (22) (2015)
Heng Li
Fast construction of FM-index for long sequence reads. CoRR (2014)
Heng Li
Fast construction of FM-index for long sequence reads. Bioinform. 30 (22) (2014)
Heng Li
Toward better understanding of artifacts in variant calling from high-coverage samples. Bioinform. 30 (20) (2014)
Heng Li
assembly. Bioinform. 28 (14) (2012)
Heng Li
Tabix: fast retrieval of sequence features from generic TAB-delimited files. Bioinform. 27 (5) (2011)
Heng Li
Improving SNP discovery by base alignment quality. Bioinform. 27 (8) (2011)
Heng Li
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinform. 27 (21) (2011)
Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8 (4) (2010)
Heng Li, Nils Homer
A survey of sequence alignment algorithms for next-generation sequencing. Briefings Bioinform. 11 (5) (2010)
Heng Li, Richard Durbin
Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinform. 26 (5) (2010)
Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25 (16) (2009)
Heng Li, Richard Durbin
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinform. 25 (14) (2009)
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor T. Marth, Gonçalo R. Abecasis, Richard Durbin
The Sequence Alignment/Map format and SAMtools. Bioinform. 25 (16) (2009)
Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan, Lachlan James M. Coin, Yiran Guo, Jean-Karim Hériché, Yafeng Hu, Karsten Kristiansen, Ruiqiang Li, Tao Liu, Alan Moses, Junjie Qin, Søren Vang, Albert J. Vilella, Abel Ureta-Vidal, Lars Bolund, Jun Wang, Richard Durbin
TreeFam: 2008 Update. Nucleic Acids Res. 36 (Database-Issue) (2008)
Shengting Li, Lijia Ma, Heng Li, Søren Vang, Yafeng Hu, Lars Bolund, Jun Wang
Snap: an integrated SNP annotation platform. Nucleic Acids Res. 35 (Database-Issue) (2007)
Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang
PigGIS: Pig Genomic Informatics System. Nucleic Acids Res. 35 (Database-Issue) (2007)
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34 (Database-Issue) (2006)