Kathryn E. Holt

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 5

Top Topics

Reference Genome

Convolutional Neural Networks

High Throughput Sequencing

Top Venues

PLoS Comput. Biol.

Health Inf. Sci. Syst.

Publications

Ryan R. Wick, Louise M. Judd, Kathryn E. Holt
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. PLoS Comput. Biol. 19 (3) (2023)
Ryan R. Wick, Kathryn E. Holt
Polypolish: Short-read polishing of long-read bacterial genome assemblies. PLoS Comput. Biol. 18 (1) (2022)
Stephen C. Watts, Scott C. Ritchie, Michael Inouye, Kathryn E. Holt
FastSpar: rapid and scalable correlation estimation for compositional data. Bioinform. 35 (6) (2019)
Ryan R. Wick, Louise M. Judd, Kathryn E. Holt
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. PLoS Comput. Biol. 14 (11) (2018)
Ryan R. Wick, Louise M. Judd, Claire L. Gorrie, Kathryn E. Holt
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput. Biol. 13 (6) (2017)
Laura Irina Rusu, Kelly L. Wyres, Matthias Reumann, Carlos Queiroz, Alexe Bojovschi, Tom Conway, Saurabh Kumar Garg, David J. Edwards, Geoff Hogg, Kathryn E. Holt
A platform for leveraging next generation sequencing for routine microbiology and public health use. Health Inf. Sci. Syst. 3 (1) (2015)
Ryan R. Wick, Mark B. Schultz, Justin Zobel, Kathryn E. Holt
genome assemblies. Bioinform. 31 (20) (2015)
Philip C. Church, Andrzej Goscinski, Kathryn E. Holt, Michael Inouye, Amol Ghoting, Konstantin Makarychev, Matthias Reumann
Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers. EMBC (2011)
Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25 (16) (2009)