Julian Parkhill

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 3

Top Topics

Genomic Sequences

Decision Models

Quantitative Analysis

Escherichia Coli

Top Venues

Briefings Bioinform.

Genom. Proteom. Bioinform.

PLoS Comput. Biol.

Publications

Yingbo Shen, Rong Zhang, Dongyan Shao, Lu Yang, Jiayue Lu, Congcong Liu, Xueyang Wang, Junyao Jiang, Boxuan Wang, Congming Wu, Julian Parkhill, Yang Wang, Timothy R. Walsh, George F. Gao, Zhangqi Shen
in Human Carriage. Genom. Proteom. Bioinform. 20 (6) (2022)
Lars Barquist, Matthew Mayho, Carla A. Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinform. 32 (7) (2016)
Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill
Roary: rapid large-scale prokaryote pan genome analysis. Bioinform. 31 (22) (2015)
Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10 (8) (2014)
Tim Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan
BamView: visualizing and interpretation of next-generation sequencing read alignments. Briefings Bioinform. 14 (2) (2013)
Flora J. Logan-Klumpler, Nishadi De Silva, Ulrike Böhme, Matthew B. Rogers, Giles Velarde, Jacqueline A. McQuillan, Tim Carver, Martin Aslett, Christian Olsen, Sandhya Subramanian, Isabelle Phan, Carol Farris, Siddhartha Mitra, Gowthaman Ramasamy, Haiming Wang, Adrian Tivey, Andrew Jackson, Robin Houston, Julian Parkhill, Matthew T. G. Holden, Omar S. Harb, Brian P. Brunk, Peter J. Myler, David S. Roos, Mark Carrington, Deborah F. Smith, Christiane Hertz-Fowler, Matthew Berriman
GeneDB - an annotation database for pathogens. Nucleic Acids Res. 40 (Database-Issue) (2012)
Tim Carver, Simon R. Harris, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinform. 28 (4) (2012)
Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark
spoligotypes from short genomic sequences. Bioinform. 28 (22) (2012)
Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman
BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinform. 26 (5) (2010)
Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25 (16) (2009)
Tim J. Carver, Nick R. Thomson, Alan J. Bleasby, Matthew Berriman, Julian Parkhill
DNAPlotter: circular and linear interactive genome visualization. Bioinform. 25 (1) (2009)
Tim J. Carver, Matthew Berriman, Adrian Tivey, Chinmay Patel, Ulrike Böhme, Bart Barrell, Julian Parkhill, Marie-Adèle Rajandream
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform. 24 (23) (2008)
Georgios S. Vernikos, Julian Parkhill
pathogenicity islands. Bioinform. 22 (18) (2006)
Tim J. Carver, Kim Rutherford, Matthew Berriman, Marie-Adèle Rajandream, Bart Barrell, Julian Parkhill
ACT: the Artemis comparison tool. Bioinform. 21 (16) (2005)
Christiane Hertz-Fowler, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32 (Database-Issue) (2004)
Kim Rutherford, Julian Parkhill, James Crook, Terry Horsnell, Peter Rice, Marie-Adèle Rajandream, Bart Barrell
Artemis: sequence visualization and annotation. Bioinform. 16 (10) (2000)