Taane G. Clark

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 6

Top Topics

Medical Treatment

Clinical Decision Support

Robust Detection

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Darren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin
Bayesian compositional regression with microbiome features via variational inference. BMC Bioinform. 24 (1) (2023)
Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark
for clinical and epidemiological applications. Briefings Bioinform. 23 (5) (2022)
Jody Phelan, Wouter Deelder, Daniel Ward, Susana G. Campino, Martin L. Hibberd, Taane G. Clark
COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data. BMC Bioinform. 23 (1) (2022)
Julian Libiseller-Egger, Jody Phelan, Susana Campino, Fady R. Mohareb, Taane G. Clark
Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers. PLoS Comput. Biol. 16 (12) (2020)
Matt Ravenhall, Susana G. Campino, Taane G. Clark
SV-Pop: population-based structural variant analysis and visualization. BMC Bioinform. 20 (1) (2019)
Matthew Higgins, Matt Ravenhall, Daniel Ward, Jody Phelan, Amy Ibrahim, Matthew S. Forrest, Taane G. Clark, Susana G. Campino
PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinform. 35 (4) (2019)
Ernest D. Benavente, Francesc Coll, Nick Furnham, Ruth McNerney, Judith R. Glynn, Susana G. Campino, Arnab Pain, Fady R. Mohareb, Taane G. Clark
PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis. BMC Bioinform. 16 (2015)
Raeece Naeem, Lailatul Hidayah, Mark D. Preston, Taane G. Clark, Arnab Pain
SVAMP: sequence variation analysis, maps and phylogeny. Bioinform. 30 (15) (2014)
Samuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark
estMOI: estimating multiplicity of infection using parasite deep sequencing data. Bioinform. 30 (9) (2014)
Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark
spoligotypes from short genomic sequences. Bioinform. 28 (22) (2012)
Mark D. Preston, Magnus Manske, Neil R. Horner, Samuel A. Assefa, Susana G. Campino, Sarah Auburn, Issaka Zongo, Jean-Bosco Ouedraogo, Francois Nosten, Timothy J. C. Anderson, Taane G. Clark
VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. Bioinform. 28 (22) (2012)
Taane G. Clark, Susana G. Campino, Elisa Anastasi, Sarah Auburn, Yik Y. Teo, Kerrin S. Small, Kirk A. Rockett, Dominic Kwiatkowski, Christopher C. Holmes
A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals. Bioinform. 26 (16) (2010)
Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana G. Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic Kwiatkowski, Taane G. Clark
SnoopCGH: software for visualizing comparative genomic hybridization data. Bioinform. 25 (20) (2009)
Yik Y. Teo, Michael Inouye, Kerrin S. Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic Kwiatkowski, Taane G. Clark
A genotype calling algorithm for the Illumina BeadArray platform. Bioinform. 23 (20) (2007)