Jason E. McDermott

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 6

Top Topics

Biologically Meaningful

Transcription Factors

Regulatory Networks

Top Venues

PLoS Comput. Biol.

Publications

Song Feng, Emily Heath, Brett A. Jefferson, Cliff A. Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine
Hypergraph models of biological networks to identify genes critical to pathogenic viral response. BMC Bioinform. 22 (1) (2021)
John S. Tregoning, Jason E. McDermott
Ten Simple Rules to becoming a principal investigator. PLoS Comput. Biol. 16 (2) (2020)
Marco Minutoli, Mahantesh Halappanavar, Ananth Kalyanaraman, Arun V. Sathanur, Ryan Mcclure, Jason E. McDermott
Fast and Scalable Implementations of Influence Maximization Algorithms. CLUSTER (2019)
Ryan Mcclure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott
Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput. Biol. 15 (9) (2019)
Jason E. McDermott, Matthew Partridge, Yana Bromberg
Ten simple rules for drawing scientific comics. PLoS Comput. Biol. 14 (1) (2018)
Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10 (2016)
Jason E. McDermott, Paul J. Bruillard, Christopher C. Overall, Luke J. Gosink, Stephen R. Lindemann
Prediction of multi-drug resistance transporters using a novel sequence analysis method. F1000Research 4 (2015)
Seunghwa Kang, Simon Kahan, Jason E. McDermott, Nicholas S. Flann, Ilya Shmulevich
: accelerating computer simulation of multicellular biological system models. Bioinform. 30 (21) (2014)
Jason E. McDermott
Promises and challenges in analysis of biological big data. BCB (2014)
Jason E. McDermott
Reproducibility: Two more red flags for suspect work. Nat. 499 (7458) (2013)
Ryan Hafen, Luke J. Gosink, Jason E. McDermott, Karin Rodland, Kerstin Kleese van Dam, William S. Cleveland
Trelliscope: A system for detailed visualization in the deep analysis of large complex data. LDAV (2013)
George K. Acquaah-Mensah, Deepti Malhotra, Madhulika Vulimiri, Jason E. McDermott, Shyam Biswal
Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 8 (7) (2012)
Jason E. McDermott, Kenneth D. Jarman, Ronald C. Taylor, Mary J. Lancaster, Harish Shankaran, Keri B. Vartanian, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo
Modeling Dynamic Regulatory Processes in Stroke. PLoS Comput. Biol. 8 (10) (2012)
Jason E. McDermott, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen, Michael G. Katze, Katrina M. Waters
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst. Biol. 6 (2012)
Antonio Sanfilippo, Jereme N. Haack, Jason E. McDermott, Susan L. Stevens, Mary P. Stenzel-Poore
Modeling Emergence in Neuroprotective Regulatory Networks. Complex (2012)
Jason E. McDermott, Pascal Braun, Richard Bonneau, Daniel R. Hyduke
Session introduction. Pacific Symposium on Biocomputing (2012)
Michelle Archuleta, Jason E. McDermott, Jeremy S. Edwards, Haluk Resat
An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions. Fundam. Informaticae 118 (4) (2012)
Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5 (2011)
Jason E. McDermott, Michelle Archuleta, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo
Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks. Pacific Symposium on Biocomputing (2011)
Ronald C. Taylor, Antonio Sanfilippo, Jason E. McDermott, Bob Baddeley, Roderick M. Riensche, Russ Jensen, Marc Verhagen, James Pustejovsky
Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts. Int. J. Comput. Biol. Drug Des. 4 (1) (2011)
Hyunjin Yoon, Charles Ansong, Jason E. McDermott, Marina A. Gritsenko, Richard D. Smith, Fred Heffron, Joshua N. Adkins
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella. BMC Syst. Biol. 5 (2011)
Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8 (4) (2010)
Jason E. McDermott, Bob Baddeley, Susan L. Stevens, Antonio Sanfilippo, Rick Riensche, Mary P. Stenzel-Poore, Ronald C. Taylor, Russ Jensen
An integrated approach to predictive genomic analytics. BCB (2010)
Ronald C. Taylor, Bob Baddeley, Antonio Sanfilippo, Rick Riensche, Marc Verhagen, Jason E. McDermott, Russ Jensen
Learning biological networks via bootstrapping with optimized go-based gene similarity. BCB (2010)
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley
An analysis pipeline for the inference of protein-protein interaction networks. Int. J. Data Min. Bioinform. 3 (4) (2009)
Tom Barker, Matthias Hank Haeusler, Frank Maguire, Jason E. McDermott
Investigating political and demographic factors in crowd based interfaces. OZCHI (2009)
Antonio Sanfilippo, Bob Baddeley, Nathaniel Beagley, Jason E. McDermott, Roderick M. Riensche, Ronald C. Taylor, Banu Gopalan
Using the gene ontology to enrich biological pathways. Int. J. Comput. Biol. Drug Des. 2 (3) (2009)
Jason E. McDermott, Ronald C. Taylor, Hyunjin Yoon, Fred Heffron
. J. Comput. Biol. 16 (2) (2009)
Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen McAteer, Joel G. Pounds
A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections. Pacific Symposium on Biocomputing (2009)
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, William R. Cannon
SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. ICMLA (2007)
Aaron N. Chang, Jason E. McDermott, Zachary Frazier, Michal Guerquin, Ram Samudrala
INTEGRATOR: interactive graphical search of large protein interactomes over the Web. BMC Bioinform. 7 (2006)
Jason E. McDermott, Michal Guerquin, Zachary Frazier, Aaron N. Chang, Ram Samudrala
BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Jason E. McDermott, Roger Eugene Bumgarner, Ram Samudrala
Functional annotation from predicted protein interaction networks. Bioinform. 21 (15) (2005)
Aaron N. Chang, Jason E. McDermott, Ram Samudrala
An enhanced Java graph applet interface for visualizing interactomes. Bioinform. 21 (8) (2005)
Jason E. McDermott, Ram Samudrala
Bioverse: functional, structural and contextual annotation of proteins and proteomes. Nucleic Acids Res. 31 (13) (2003)