Shannon K. McWeeney

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 6

Top Topics

Visual Analytics

Biomedical Informatics

Top Venues

Publications

Nathaniel J. Evans, Gordon B. Mills, Guanming Wu, Xubo Song, Shannon K. McWeeney
Data Valuation with Gradient Similarity. CoRR (2024)
Joshua G. Burkhart, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng
Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease. Patterns 4 (7) (2023)
Benjamin A. Cordier, Nicolas P. D. Sawaya, Gian Giacomo Guerreschi, Shannon K. McWeeney
Biology and medicine in the landscape of quantum advantages. CoRR (2021)
Harry Hochheiser, Javed Mostafa, Nils Gehlenborg, Shannon K. McWeeney, Valerie Florance
Data Science in Biomedical Informatics Education: Critical Problems and Innovative Solutions. AMIA (2018)
Daniel Bottomly, Shannon K. McWeeney, Beth Wilmot
HitWalker2: visual analytics for precision medicine and beyond. Bioinform. 32 (8) (2016)
Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10 (2016)
Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney
plethy: management of whole body plethysmography data in R. BMC Bioinform. 16 (2015)
V. M. Megler, David Maier, Daniel Bottomly, Libbey White, Shannon K. McWeeney, Beth Wilmot
Data Like This: Ranked Search of Genomic Data Vision Paper. ExploreDB@SIGMOD/PODS (2015)
Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney
oligoMask: A Framework for Assessing and Removing the Effect of Genetic Variants on Microarray Probes. R J. 6 (1) (2014)
Aurora S. Blucher, Shannon K. McWeeney
Challenges in Secondary Analysis of High Throughput Screening Data. Pacific Symposium on Biocomputing (2014)
David L. Gibbs, Arie Baratt, Ralph S. Baric, Yoshihiro Kawaoka, Richard D. Smith, Eric S. Orwoll, Michael G. Katze, Shannon K. McWeeney
Protein co-expression network analysis (ProCoNA). J. Clin. Bioinform. 3 (2013)
Daniel Bottomly, Beth Wilmot, Jeffrey W. Tyner, Christopher A. Eide, Marc M. Loriaux, Brian J. Druker, Shannon K. McWeeney
HitWalker: variant prioritization for personalized functional cancer genomics. Bioinform. 29 (4) (2013)
Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot
A simulation framework to investigate in vitro viral infection dynamics. J. Comput. Sci. 4 (3) (2013)
Ovidiu D. Iancu, Sunita Kawane, Daniel Bottomly, Robert P. Searles, Robert Hitzemann, Shannon K. McWeeney
coexpression network inference. Bioinform. 28 (12) (2012)
Michael Mooney, Beth Wilmot, Shannon K. McWeeney
The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5 (2011)
Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot
A Simulation Framework to Investigate in vitro Viral Infection Dynamics. ICCS (2011)
Ted Laderas, Cory Bystrom, Debra McMillen, Guang Fan, Shannon K. McWeeney
: an open-source tool for integrated protein identification and quantitation. Bioinform. 23 (24) (2007)
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30 (1) (2002)