Jonathan Schug

Publication Activity (10 Years)

Years Active: 1997-2018
Publications (10 Years): 1

Top Topics

Homogeneous Regions

Automatic Image Annotation

Image Annotation

Top Venues

Publications

David E. Condon, Phu V. Tran, Yu-Chin Lien, Jonathan Schug, Michael K. Georgieff, Rebecca A. Simmons, Kyoung-Jae Won
Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus. BMC Bioinform. 19 (1) (2018)
Yan Gao, Jonathan Schug, Lindsay B. McKenna, John Le Lay, Klaus H. Kaestner, Linda E. Greenbaum
Tissue-specific regulation of mouse MicroRNA genes in endoderm-derived tissues. Nucleic Acids Res. 39 (2) (2011)
Gregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinform. 27 (18) (2011)
Hongbo M. Xie, Juan C. Perin, Theodore G. Schurr, Matthew C. Dulik, Sergey I. Zhadanov, Joseph A. Baur, Michael P. King, Emily Place, Colleen Clarke, Michael Grauer, Jonathan Schug, Avni Santani, Anthony Albano, Cecilia Kim, Vincent Procaccio, Hakon Hakonarson, Xiaowu Gai, Marni J. Falk
Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy. BMC Bioinform. 12 (2011)
Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.
Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL). DILS (2007)
Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes. Nucleic Acids Res. 35 (Database-Issue) (2007)
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31 (1) (2003)
Rajeev Alur, Calin Belta, Franjo Ivancic, Vijay Kumar, Harvey Rubin, Jonathan Schug, Oleg Sokolsky, Jonathan Webb
Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks. HiPC (2002)
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30 (1) (2002)
Rajeev Alur, Calin Belta, Vijay Kumar, Max Mintz, George J. Pappas, Harvey Rubin, Jonathan Schug
Modeling and analyzing biomolecular networks. Comput. Sci. Eng. 4 (1) (2002)
Calin Belta, Jonathan Schug, Thao Dang, Vijay Kumar, George J. Pappas, Harvey Rubin, Paul Dunlap
Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio fischeri. CDC (2001)
Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton
A relational schema for both array-based and SAGE gene expression experiments. Bioinform. 17 (4) (2001)
Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Syst. J. 40 (2) (2001)
Jonathan Schug, G. Christian Overton
Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding. ISMB (1997)