Jonathan Crabtree

Publication Activity (10 Years)

Years Active: 1993-2023
Publications (10 Years): 3

Top Topics

Web Environment

Functional Magnetic Resonance Imaging

Top Venues

IASSIST Conference

Nucleic Acids Res.

Publications

Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. Nucleic Acids Res. 51 (D1) (2023)
Pramod Chundury, Mehmet Adil Yalçin, Jonathan Crabtree, Anup Mahurkar, Lisa M. Shulman, Niklas Elmqvist
Contextual in situ help for visual data interfaces. Inf. Vis. 22 (1) (2023)
Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White
HMPDACC: a Human Microbiome Project Multi-omic data resource. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White
Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG. Bioinform. 30 (21) (2014)
Jonathan Crabtree, Lynda Kellam
Expansion of the Odum Institute Dataverse Network: Forming Partnerships, Harnessing Infrastructures, and increasing Preservation of Research Data. IASSIST Conference (2013)
Jonathan Crabtree
DataBridge: Building an E-science Collaboration Environment Tool for Linking Diverse Datasets into a Socio-metric Network. IASSIST Conference (2013)
Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman
Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Res. 40 (Database-Issue) (2012)
David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Herve Tettelin
Using Sybil for interactive comparative genomics of microbes on the web. Bioinform. 28 (2) (2012)
Jonathan Crabtree
Virtual Archiving for Public Opinion Polls. iPRES (2011)
Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli
Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinform. 26 (12) (2010)
Jonathan Crabtree, Antoine de Torcy, Mason Chua
Automated DDI Metadata Harvesting and Replication for Preservation Purposes within iRODS. IASSIST (2010)
Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock
research community. Nucleic Acids Res. 38 (Database-Issue) (2010)
Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton
Pathema: a clade-specific bioinformatics resource center for pathogen research. Nucleic Acids Res. 38 (Database-Issue) (2010)
Nelson Axelrod, Yuan Lin, Pauline C. Ng, Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert Strausberg, Marvin Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy
The HuRef Browser: a web resource for individual human genomics. Nucleic Acids Res. 37 (Database-Issue) (2009)
Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree
Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH. eScience (2009)
Jewel H. Ward, Jonathan Crabtree
Integrating ddi metadata into the nara transcontinental persistent archive prototype via the oai-pmh. JCDL (2008)
Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H. Badger, Jane M. Carlton, Joana C. Silva
IDEA: Interactive Display for Evolutionary Analyses. BMC Bioinform. 9 (2008)
Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Res. 32 (Database-Issue) (2004)
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res. 31 (1) (2003)
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30 (1) (2002)
Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton
A relational schema for both array-based and SAGE gene expression experiments. Bioinform. 17 (4) (2001)
Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Syst. J. 40 (2) (2001)
Steve Fischer, Jonathan Crabtree, Brian P. Brunk, M. Gibson, G. Christian Overton
bioWidgets: data interaction components for genomics. Bioinform. 15 (10) (1999)
John P. Granieri, Jonathan Crabtree, Norman I. Badler
Production and Playback of Human Figure Motion for Visual Simulation. ACM Trans. Model. Comput. Simul. 5 (3) (1995)
John P. Granieri, Jonathan Crabtree, Norman I. Badler
Production and playback of human figure motion for 3D virtual environments. VRAIS (1995)
John P. Granieri, Welton Becket, Barry D. Reich, Jonathan Crabtree, Norman I. Badler
Behavioral Control for Real-Time Simulated Human Agents. SI3D (1995)
Kim B. Bruce, Jonathan Crabtree, Thomas P. Murtagh, Robert van Gent, Allyn Dimock, Robert Muller
Safe and Decidable Type Checking in an Object-Oriented Language. OOPSLA (1993)
Kim B. Bruce, Jonathan Crabtree, Gerlad Kanapathy
An Operational Semantics for TOOPLE: A Statically-Typed Object-Oriented Programming Language. MFPS (1993)