Katrina M. Waters

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 6

Top Topics

Resource Manager

Biologically Relevant

Gene Regulatory Networks

Biological Networks

Top Venues

BMC Syst. Biol.

Frontiers Artif. Intell.

Frontiers Bioinform.

Publications

Javier E. Flores, Daniel Claborne, Zachary D. Weller, Bobbie-Jo M. Webb-Robertson, Katrina M. Waters, Lisa M. Bramer
Missing data in multi-omics integration: Recent advances through artificial intelligence. Frontiers Artif. Intell. 6 (2023)
Ryan S. McClure, Yvonne Rericha, Katrina M. Waters, Robyn L. Tanguay
3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism. Frontiers Bioinform. 3 (2023)
Song Feng, Emily Heath, Brett A. Jefferson, Cliff A. Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine
Hypergraph models of biological networks to identify genes critical to pathogenic viral response. BMC Bioinform. 22 (1) (2021)
Joseph Brown, Aaron R. Phillips, David A. Lewis, Michael-Andres Mans, Yvonne Chang, Robert L. Tanguay, Elena S. Peterson, Katrina M. Waters, Susan C. Tilton
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. BMC Bioinform. 20 (1) (2019)
Ryan Mcclure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott
Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput. Biol. 15 (9) (2019)
Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10 (2016)
Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Li, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze
Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. BMC Syst. Biol. 7 (2013)
Susan C. Tilton, Tamara L. Tal, Sheena M. Scroggins, Jill A. Franzosa, Elena S. Peterson, Robert L. Tanguay, Katrina M. Waters
Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools. BMC Bioinform. 13 (2012)
Jason E. McDermott, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen, Michael G. Katze, Katrina M. Waters
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst. Biol. 6 (2012)
Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5 (2011)
Melissa M. Matzke, Katrina M. Waters, Thomas O. Metz, Jon M. Jacobs, Amy C. Sims, Ralph S. Baric, Joel G. Pounds, Bobbie-Jo M. Webb-Robertson
Improved quality control processing of peptide-centric LC-MS proteomics data. Bioinform. 27 (20) (2011)
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 26 (13) (2010)
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 24 (13) (2008)
Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. Bioinform. 24 (24) (2008)
Anuj R. Shah, Mudita Singhal, Tara D. Gibson, Chandrika Sivaramakrishnan, Katrina M. Waters, Ian Gorton
An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses. eScience (2008)
Anuj R. Shah, Mudita Singhal, Kyle R. Klicker, Eric G. Stephan, H. Steven Wiley, Katrina M. Waters
Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager. Bioinform. 23 (7) (2007)
Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. SC (2006)