Yana Bromberg

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 14

Top Topics

Annual Conference On Computational Learning Theory

Single Nucleotide Polymorphisms

Protein Structure

Computational Approaches

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Ariel A. Aptekmann, J. Buongiorno, D. Giovannelli, M. Glamoclija, D. U. Ferreiro, Yana Bromberg
: identifying metal-binding potential in protein sequence. Bioinform. 38 (14) (2022)
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Hesham ElAbd, Yana Bromberg, Adrienne Hoarfrost, Tobias Lenz, Andre Franke, Mareike Wendorff
Amino acid encoding for deep learning applications. BMC Bioinform. 21 (1) (2020)
Yana Bromberg, Nadia El-Mabrouk, Predrag Radivojac
ISMB/ECCB 2019 Proceedings. Bioinform. 35 (14) (2019)
Chengsheng Zhu, Yannick Mahlich, Maximilian Miller, Yana Bromberg
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. Nucleic Acids Res. 46 (Database-Issue) (2018)
Chengsheng Zhu, Yannick Mahlich, Maximilian Miller, Yana Bromberg
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. Nucleic Acids Res. 46 (Database-Issue) (2018)
Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg
HFSP: high speed homology-driven function annotation of proteins. Bioinform. 34 (13) (2018)
Yana Bromberg, Predrag Radivojac
ISMB 2018 proceedings. Bioinform. 34 (13) (2018)
Jason E. McDermott, Matthew Partridge, Yana Bromberg
Ten simple rules for drawing scientific comics. PLoS Comput. Biol. 14 (1) (2018)
Yana Bromberg, Matthew W. Hahn, Predrag Radivojac
Session Introduction. PSB (2017)
Maximilian Miller, Chengsheng Zhu, Yana Bromberg
clubber: removing the bioinformatics bottleneck in big data analyses. J. Integr. Bioinform. 14 (2) (2017)
Niko Beerenwinkel, Yana Bromberg
ISMB/ECCB 2017 proceedings. Bioinform. 33 (14) (2017)
Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease. PLoS Comput. Biol. 12 (8) (2016)
Casey S. Greene, James A. Foster, Bruce A. Stanton, Deborah A. Hogan, Yana Bromberg
Computational Approaches to Study Microbes and Microbiomes. PSB (2016)
Chengsheng Zhu, Tom O. Delmont, Timothy M. Vogel, Yana Bromberg
Functional Basis of Microorganism Classification. PLoS Comput. Biol. 11 (8) (2015)
Yana Bromberg, Emidio Capriotti
Editor's Choice: SNP-SIG 2013: the state of the art of genomic variant interpretation. Bioinform. 31 (3) (2015)
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Comput. Biol. 9 (11) (2013)
Yana Bromberg
Chapter 15: Disease Gene Prioritization. PLoS Comput. Biol. 9 (4) (2013)
Emidio Capriotti, Nathan L. Nehrt, Maricel G. Kann, Yana Bromberg
Bioinformatics for personal genome interpretation. Briefings Bioinform. 13 (4) (2012)
Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg
SNPdbe: constructing an nsSNP functional impacts database. Bioinform. 28 (4) (2012)
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Yana Bromberg, Burkhard Rost
Correlating protein function and stability through the analysis of single amino acid substitutions. BMC Bioinform. 10 (S-8) (2009)
Yana Bromberg, Burkhard Rost
mutagenesis highlights functionally important residues in proteins. ECCB (2008)
Yana Bromberg, Guy Yachdav, Burkhard Rost
SNAP predicts effect of mutations on protein function. Bioinform. 24 (20) (2008)