Theodore Alexandrov

Publication Activity (10 Years)

Years Active: 2008-2020
Publications (10 Years): 5

Top Topics

High Throughput

Mathematical Methods

Mass Spectrometry

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Katja Ovchinnikova, Lachlan Stuart, Alexander Rakhlin, Sergey I. Nikolenko, Theodore Alexandrov
ColocML: machine learning quantifies co-localization between mass spectrometry images. Bioinform. 36 (10) (2020)
Katja Ovchinnikova, Vitaly Kovalev, Lachlan Stuart, Theodore Alexandrov
OffsampleAI: artificial intelligence approach to recognize off-sample mass spectrometry images. BMC Bioinform. 21 (1) (2020)
Andrew Palmer, Prasad Phapale, Dominik Fay, Theodore Alexandrov
Curatr: a web application for creating, curating and sharing a mass spectral library. Bioinform. 34 (8) (2018)
Theodore Alexandrov, Nina Golyandina, David M. Holloway, Alexander Shlemov, Alexander V. Spirov
Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. J. Comput. Biol. 25 (11) (2018)
Theodore Alexandrov, Sebastian Böcker, Pieter C. Dorrestein, Emma Schymanski
Computational Metabolomics: Identification, Interpretation, Imaging (Dagstuhl Seminar 17491). Dagstuhl Reports 7 (12) (2017)
Andrew Palmer, Ekaterina Ovchinnikova, Mikael Thuné, Régis Lavigne, Blandine Guével, Andrey Dyatlov, Olga Vitek, Charles Pineau, Mats Borén, Theodore Alexandrov
Using collective expert judgements to evaluate quality measures of mass spectrometry images. Bioinform. 31 (12) (2015)
Theodore Alexandrov, Philip E. Bourne
Learning How to Run a Lab: Interviews with Principal Investigators. PLoS Comput. Biol. 9 (11) (2013)
Theodore Alexandrov, Andreas M. Bartels
Testing for presence of known and unknown molecules in imaging mass spectrometry. Bioinform. 29 (18) (2013)
Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. PLoS Comput. Biol. 9 (11) (2013)
Herbert Thiele, Dennis Trede, Stefan Heldmann, Theodore Alexandrov, Bernd Fischer, Peter Maass
3D Visualisierung von Organismen. GI-Jahrestagung (2012)
Alexander V. Spirov, Nina Golyandina, David M. Holloway, Theodore Alexandrov, Ekaterina N. Spirova, Francisco J. P. Lopes
Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. EvoBIO (2012)
Dennis Trede, Jan Hendrik Kobarg, Janina Oetjen, Herbert Thiele, Peter Maass, Theodore Alexandrov
On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data. J. Integr. Bioinform. 9 (1) (2012)
Dennis Trede, Theodore Alexandrov, Chen Sagiv, Peter Maass
Magnification of Label Maps With a Topology-Preserving Level-Set Method. IEEE Trans. Image Process. 21 (9) (2012)
Ilya Chernyavsky, Theodore Alexandrov, Peter Maass, Sergey I. Nikolenko
A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data. GCB (2012)
Theodore Alexandrov
MALDI imaging mass spectrometry: statistical data analysis and current computational challenges. BMC Bioinform. 13 (S-16) (2012)
Theodore Alexandrov, Jan Hendrik Kobarg
Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering. Bioinform. 27 (13) (2011)
Ekaterina Ovchinnikova, Niloofar Montazeri, Theodore Alexandrov, Jerry R. Hobbs, Michael C. McCord, Rutu Mulkar-Mehta
Abductive Reasoning with a Large Knowledge Base for Discourse Processing. IWCS (2011)
Ekaterina Ovchinnikova, Laure Vieu, Alessandro Oltramari, Stefano Borgo, Theodore Alexandrov
Data-Driven and Ontological Analysis of FrameNet for Natural Language Reasoning. LREC (2010)
Theodore Alexandrov
Self-taught Learning for Classification of Mass Spectrometry Data: A Case Study of Colorectal Cancer. GCB (2009)
Theodore Alexandrov, Jens Decker, Bart J. A. Mertens, André M. Deelder, Rob A. E. M. Tollenaar, Peter Maass, Herbert Thiele
Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation. Bioinform. 25 (5) (2009)
Ekaterina Ovchinnikova, Theodore Alexandrov, Tonio Wandmacher
Automatic Acquisition of the. EMNLP (2009)
Theodore Alexandrov, Nina Golyandina, Alexander V. Spirov
: Exponential-in-Distance Patterns. J. Electr. Comput. Eng. 2008 (2008)