Alexander V. Spirov

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 16

Top Topics

Evolutionary Computation

Gene Expression

Quantitative Analysis

Top Venues

J. Bioinform. Comput. Biol.

GECCO (Companion)

J. Comput. Biol.

Publications

Alexander V. Spirov
Evolution of the RNA world: From signals to codes. Biosyst. 234 (2023)
Alexander V. Spirov, Ekaterina M. Myasnikova
Problem of Domain/Building Block Preservation in the Evolution of Biological Macromolecules and Evolutionary Computation. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Anton V. Eremeev, Alexander V. Spirov
Modeling SELEX for regulatory regions using Royal Road and Royal Staircase fitness functions. Biosyst. 200 (2021)
Ekaterina M. Myasnikova, Marat A. Sabirov, Alexander V. Spirov
Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. J. Comput. Biol. 28 (8) (2021)
Ekaterina M. Myasnikova, Victoria Yu. Samuta, Alexander V. Spirov
Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. ISBRA (2020)
Ekaterina M. Myasnikova, Alexander V. Spirov
early embryonic development as a model for the study of the temporal identity of neuroblasts. Biosyst. 197 (2020)
Anton V. Eremeev, Alexander V. Spirov
Evaluation of runtime bounds for SELEX procedure with high selection pressure. GECCO (Companion) (2019)
Alexander V. Spirov, Ekaterina M. Myasnikova
Techniques from evolutionary computation to implement as experimental approaches in synthetic biology: tests in silico. GECCO (Companion) (2019)
Alexander V. Spirov, Ekaterina M. Myasnikova
Linguistic modelling of gene regulation: Translation from the language of experiments to the language of modelling. ICT Express 5 (3) (2019)
Polina Zhornikova, Nina Golyandina, Alexander V. Spirov
Noise model estimation with application to gene expression. J. Bioinform. Comput. Biol. 17 (2) (2019)
Ekaterina M. Myasnikova, Alexander V. Spirov
embryo. Biosyst. 166 (2018)
Theodore Alexandrov, Nina Golyandina, David M. Holloway, Alexander Shlemov, Alexander V. Spirov
Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. J. Comput. Biol. 25 (11) (2018)
Anton V. Eremeev, Alexander V. Spirov
Modularity in biological evolution and evolutionary computation. CoRR (2018)
Ekaterina M. Myasnikova, Alexander V. Spirov
Relative sensitivity analysis of the predictive properties of sloppy models. J. Bioinform. Comput. Biol. 16 (2) (2018)
Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway
. J. Bioinform. Comput. Biol. 14 (2) (2016)
Leonid Zamdborg, David M. Holloway, Juan Julián Merelo Guervós, Vladimir F. Levchenko, Alexander V. Spirov
Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem. Inf. Sci. 306 (2015)
Elizaveta A. Zagrijchuk, Marat A. Sabirov, David M. Holloway, Alexander V. Spirov
gene indicates redundancy in cis-regulatory organization and spatial gene expression. J. Bioinform. Comput. Biol. 12 (2) (2014)
Alexander V. Spirov, Elizaveta A. Zagriychuk, David M. Holloway
Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites. Parallel Process. Lett. 24 (2) (2014)
Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. PRIB (2013)
Alexander V. Spirov, David M. Holloway
Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development. ICCS (2013)
David M. Holloway, Alexander B. Kazansky, Alexander V. Spirov
Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites. IJCCI (2012)
Alexander V. Spirov, Nina Golyandina, David M. Holloway, Theodore Alexandrov, Ekaterina N. Spirova, Francisco J. P. Lopes
Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. EvoBIO (2012)
Alexander V. Spirov, David M. Holloway
Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback. CIBCB (2012)
Nina Golyandina, David M. Holloway, Francisco J. P. Lopes, Alexander V. Spirov, Ekaterina N. Spirova, Konstantin Usevich
Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. ICCS (2012)
Alexander V. Spirov, David M. Holloway
Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions. IJCCI (ECTA-FCTA) (2011)
David M. Holloway, Francisco J. P. Lopes, Luciano da Fontoura Costa, Bruno Augusto Nassif Travençolo, Nina Golyandina, Konstantin Usevich, Alexander V. Spirov
Segmentation. PLoS Comput. Biol. 7 (2) (2011)
Alexander V. Spirov, David M. Holloway
Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations. ICCS (1) (2010)
Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz
Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5 (3) (2009)
Alexander V. Spirov, Alexander B. Kazansky, Leonid Zamdborg, Juan Julián Merelo Guervós, Vladimir F. Levchenko
Forced Evolution in Silico by Artificial Transposons and their Genetic Operators: The John Muir Ant Problem CoRR (2009)
Theodore Alexandrov, Nina Golyandina, Alexander V. Spirov
: Exponential-in-Distance Patterns. J. Electr. Comput. Eng. 2008 (2008)
Francisco J. P. Lopes, Fernando M. C. Vieira, David M. Holloway, Paulo Mascarello Bisch, Alexander V. Spirov
Embryo. PLoS Comput. Biol. 4 (9) (2008)
Alexander V. Spirov, David M. Holloway
Gene Expression. EURASIP J. Adv. Signal Process. 2003 (8) (2003)
Alexander V. Spirov, David M. Holloway
Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. Silico Biol. 3 (1-2) (2003)
Alexander V. Spirov, Alexander B. Kazansky
Jumping Genes-mutators Can Rise Efficacy Of Evolutionary Search. GECCO (2002)
Alexander V. Spirov, Mikhail Borovsky, Olesya A. Spirova
HOX Pro DB: the functional genomics of hox ensembles. Nucleic Acids Res. 30 (1) (2002)
Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern. Real Time Imaging 8 (6) (2002)
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression. EvoWorkshops (2001)
Alexander V. Spirov, Timothy Bowler, John Reinitz
HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. 28 (1) (2000)
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid. EvoWorkshops (2000)
Vassili N. Serov, Alexander V. Spirov, Maria Samsonova
Graphical interface to the genetic network database GeNet. Bioinform. 14 (6) (1998)
Alexander V. Spirov, A. S. Kadyrov
Transposon Element Technique Applied to GA-Based John Muir's Trail Test. HPCN Europe (1998)
Alexander V. Spirov
Self-Assemblage of Gene Nets in Evolution via Recruiting of New Netters. PPSN (1996)