John Reinitz

Publication Activity (10 Years)

Years Active: 1994-2020
Publications (10 Years): 4

Top Topics

Biological Vision

Computational Models

Simulated Annealing

Hypothesis Testing

Top Venues

PLoS Comput. Biol.

Publications

Yi Liu, Kenneth Barr, John Reinitz
Fully interpretable deep learning model of transcriptional control. Bioinform. 36 (Supplement-1) (2020)
Kenneth Barr, John Reinitz, Ovidiu Radulescu
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. PLoS Comput. Biol. 15 (11) (2019)
Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu
Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry. CMSB (2016)
Zhihao Lou, John Reinitz
Parallel simulated annealing using an adaptive resampling interval. Parallel Comput. 53 (2016)
Dima Grigoriev, John Reinitz, Sergei Vakulenko, Andreas Weber
Punctuated evolution and robustness in morphogenesis. Biosyst. 123 (2014)
Konstantin Kozlov, Svetlana Surkova, Ekaterina M. Myasnikova, John Reinitz, Maria Samsonova
Mutants. PLoS Comput. Biol. 8 (8) (2012)
Vitaly V. Gursky, Lena Panok, Ekaterina M. Myasnikova, Manu, Maria Samsonova, John Reinitz, Alexander M. Samsonov
Mechanisms of gap gene expression canalization in the Drosophila blastoderm. BMC Syst. Biol. 5 (2011)
Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz
Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5 (3) (2009)
Ekaterina M. Myasnikova, Svetlana Surkova, Lena Panok, Maria Samsonova, John Reinitz
. Bioinform. 25 (3) (2009)
Andrei Pisarev, Ekaterina Poustelnikova, Maria Samsonova, John Reinitz
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. Nucleic Acids Res. 37 (Database-Issue) (2009)
Ekaterina M. Myasnikova, Svetlana Surkova, Maria Samsonova, John Reinitz
Estimation of Errors in Gene Expression Data Introduced by Diffractive Blurring of Confocal Images. IMVIP (2009)
Yu Feng Wu, Ekaterina M. Myasnikova, John Reinitz
Master equation simulation analysis of immunostained Bicoid morphogen gradient. BMC Syst. Biol. 1 (2007)
Theodore J. Perkins, Johannes Jaeger, John Reinitz, Leon Glass
. PLoS Comput. Biol. 2 (5) (2006)
Andrei Pisarev, Ekaterina Poustelnikova, Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz
ImageServer, a Tool for On-line Processing and Analysis of Biological Images. J. Integr. Bioinform. 2 (1) (2005)
Ekaterina Poustelnikova, Andrei Pisarev, Maxim Blagov, Maria Samsonova, John Reinitz
A database for management of gene expression data in situ. Bioinform. 20 (14) (2004)
Konstantin Kozlov, Ekaterina M. Myasnikova, Andrei Pisarev, Maria Samsonova, John Reinitz
A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. Silico Biol. 2 (2) (2002)
Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz
Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. ISMB (2002)
Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern. Real Time Imaging 8 (6) (2002)
Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. 2 (2) (2002)
John Reinitz
Looking at functional genomics from inside the Drosophila blastoderm. German Conference on Bioinformatics (2001)
Igor N. Aizenberg, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz
Application of the Neural Networks Based on Multi-valued Neurons to Classification of the Images of Gene Expression Patterns. Fuzzy Days (2001)
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression. EvoWorkshops (2001)
Ekaterina M. Myasnikova, Anastassia Samsonova, Konstantin Kozlov, Maria Samsonova, John Reinitz
Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinform. 17 (1) (2001)
Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz, David Kosman
Fast Redundant Dyadic Wavelet Transform in Application to Spatial Registration of the Expression Patterns of Drosophila Segmentation Genes. ICPR (2000)
Maria Samsonova, Ekaterina Poustelnikova, Andrei Pisarev, John Reinitz
Design of the Integrated Atlas of Segmentation Gene Expression in Situ. German Conference on Bioinformatics (2000)
Alexander V. Spirov, Timothy Bowler, John Reinitz
HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. 28 (1) (2000)
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid. EvoWorkshops (2000)
Ekaterina M. Myasnikova, David Kosman, John Reinitz, Maria Samsonova
Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes. ISMB (1999)
Eric Mjolsness, Charles Garrett, John Reinitz, David H. Sharp
Modeling the Connection Between Development and Evolution: Preliminary Report. Evolution and Biocomputation (1995)
L. W. Wright, J. B. Lichter, John Reinitz, Mark A. Shifman, Kenneth K. Kidd, Perry L. Miller
Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty. Comput. Appl. Biosci. 10 (4) (1994)