Nikolay A. Kolchanov

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 7

Top Topics

Motif Discovery

Computational Biology

Top Venues

J. Bioinform. Comput. Biol.

BMC Syst. Biol.

J. Integr. Bioinform.

Publications

Yuriy L. Orlov, Ming Chen, Nikolay A. Kolchanov, Ralf Hofestädt
BGRS: bioinformatics of genome regulation and data integration. J. Integr. Bioinform. 20 (3) (2024)
Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. 20 (3) (2024)
Yuriy L. Orlov, Tatiana V. Tatarinova, Maksim V. Zakhartsev, Nikolay A. Kolchanov
Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017). J. Bioinform. Comput. Biol. 16 (1) (2018)
Oleg V. Vishnevsky, Andrey V. Bocharnikov, Nikolay A. Kolchanov
Argo_CUDA: Exhaustive GPU based approach for motif discovery in large DNA datasets. J. Bioinform. Comput. Biol. 16 (1) (2018)
Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary. J. Bioinform. Comput. Biol. 15 (2) (2017)
Kirill E. Medvedev, Nikolay A. Kolchanov, Dmitry A. Afonnikov
Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions. J. Bioinform. Comput. Biol. 15 (2) (2017)
Dmitry S. Ischenko, Dmitry G. Alexeev, Egor Shitikov, Alexandra Kanygina, Maja Malakhova, Elena S. Kostryukova, Andrey Larin, Sergey Kovalchuk, Olga Pobeguts, Ivan Butenko, Nikolay A. Kolchanov, Ilya A. Altukhov, Elena Ilina, Vadim Govorun
Large scale analysis of amino acid substitutions in bacterial proteomics. BMC Bioinform. 17 (2016)
Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. 9 (S-2) (2015)
Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. 9 (S-2) (2015)
Yuriy L. Orlov, Ralf Hofestädt, Nikolay A. Kolchanov
Introductory note for BGRS\SB-2014 special issue. J. Bioinform. Comput. Biol. 13 (1) (2015)
Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
Permanent proteins in the urine of healthy humans during the Mars-500 experiment. J. Bioinform. Comput. Biol. 13 (1) (2015)
Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11 (1) (2013)
Victoria V. Mironova, Nadezda A. Omelyanchuk, Maria S. Savina, Petr M. Ponomarenko, Mikhail P. Ponomarenko, Vitali A. Likhoshvai, Nikolay A. Kolchanov
How Multiple Auxin Responsive Elements May Interact in plant promoters: a Reverse Problem solution. J. Bioinform. Comput. Biol. 11 (1) (2013)
Konstantin Kozlov, Nikita Ivanisenko, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. PaCT (2013)
Nikolay A. Kolchanov, Yuriy L. Orlov
Introductory Note for Bgrs-2012 Special Issue. J. Bioinform. Comput. Biol. 11 (1) (2013)
Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. 11 (3-4) (2012)
Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. 40 (Database-Issue) (2012)
Valentin V. Suslov, Petr M. Ponomarenko, Vadim M. Efimov, Ludmila K. Savinkova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
Snps in the HIV-1 TATA Box and the Aids pandemic. J. Bioinform. Comput. Biol. 8 (3) (2010)
Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7 (1) (2010)
Victoria V. Mironova, Nadezda A. Omelyanchuk, Guy Yosiphon, Stanislav I. Fadeev, Nikolay A. Kolchanov, Eric Mjolsness, Vitali A. Likhoshvai
A plausible mechanism for auxin patterning along the developing root. BMC Syst. Biol. 4 (2010)
Nikolay A. Kolchanov, Elena V. Ignatieva, Olga A. Podkolodnaya, Elena A. Ananko, Tamara M. Khlebodarova, Irina L. Stepanenko, Tatyana I. Merkulova, Vasily M. Merkulov, Nikolay L. Podkolodny, Aida G. Romashchenko
TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. Intell. Data Anal. 12 (5) (2008)
Victor G. Levitsky, Elena V. Ignatieva, Eugenia Aman, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. Intell. Data Anal. 12 (5) (2008)
Sergey A. Lashin, Valentin V. Suslov, Nikolay A. Kolchanov, Yuri G. Matushkin
Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program. Silico Biol. 7 (3) (2007)
Ilya R. Akberdin, Evgeniy A. Ozonov, Victoria V. Mironova, Nadezda A. Omelyanchuk, Vitali A. Likhoshvai, Dmytry N. Gorpinchenko, Nikolay A. Kolchanov
A Cellular Automaton to Model the Development of Primary Shoot Meristems of Arabidopsis thaliana. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Sergei N. Rodin, Nikolay A. Kolchanov
Fifth International Conference on Bioinformatics of Genome Regulation and Structure-BGRS'2006. Silico Biol. 7 (3) (2007)
Denis K. Ponomaryov, Nadezhda Omelianchuk, Victoria V. Mironova, Eugene Zalevsky, Nikolay L. Podkolodny, Eric Mjolsness, Nikolay A. Kolchanov
From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications. KONT/KPP (2007)
Tamara M. Khlebodarova, Nina V. Tikunova, Alla V. Kachko, Irina L. Stepanenko, Nikolay L. Podkolodny, Nikolay A. Kolchanov
Application of Bioinformatics Resources for Genosensor Design. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, Elena A. Ananko, Dmitry Yu. Oshchepkov, Victor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman
Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. Briefings Bioinform. 8 (4) (2007)
Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP (2007)
Alexey V. Kochetov, Andrey Palyanov, Igor I. Titov, Dmitry A. Grigorovich, Akinori Sarai, Nikolay A. Kolchanov
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinform. 8 (2007)
Victor G. Levitsky, Elena V. Ignatieva, Elena A. Ananko, Igor I. Turnaev, Tatyana I. Merkulova, Nikolay A. Kolchanov, T. Charles Hodgman
Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions. BMC Bioinform. 8 (2007)
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Merkulova, Nikolay A. Kolchanov
Recognition of interferon-inducible sites, promoters, and enhancers. BMC Bioinform. 8 (2007)
Konstantin V. Gunbin, Leonid V. Omelyanchuk, Vladislav V. Kogai, Stanislav I. Fadeev, Nikolay A. Kolchanov
Model of the reception of Hedgehog morphogen concentration Gradient: Comparison with an Extended Range of Experimental Data. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov
The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study. Silico Biol. 7 (3) (2007)
Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Victor G. Levitsky, Aleksey V. Katokhin, Olga A. Podkolodnaya, Dagmara P. Furman, Nikolay A. Kolchanov
NPRD: Nucleosome Positioning Region Database. Nucleic Acids Res. 33 (Database-Issue) (2005)
Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Olga A. Podkolodnaya, D. A. Rasskazov, Denis S. Miginsky, Vitali A. Likhoshvai, Alexander V. Ratushny, N. N. Podkolodnaya, Nikolay A. Kolchanov
GeneNet in 2005. Nucleic Acids Res. 33 (Database-Issue) (2005)
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. 33 (Database-Issue) (2005)
Oleg V. Vishnevsky, Nikolay A. Kolchanov
ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Dmitry A. Afonnikov, Nikolay A. Kolchanov
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Nikolay A. Kolchanov, Ralf Hofestädt
The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. Silico Biol. 3 (1-2) (2003)
Elena A. Ananko, Nikolay L. Podkolodny, Irina L. Stepanenko, Elena V. Ignatieva, Olga A. Podkolodnaya, Nikolay A. Kolchanov
GeneNet: a database on structure and functional organisation of gene networks. Nucleic Acids Res. 30 (1) (2002)
Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov
Construction of stochastic context trees for genetical texts. Silico Biol. 2 (3) (2002)
Nikolay A. Kolchanov, Eugenia A. Nedosekina, Elena A. Ananko, Vitali A. Likhoshvai, Nikolay L. Podkolodny, Alexander V. Ratushny, Irina L. Stepanenko, Olga A. Podkolodnaya, Elena V. Ignatieva, Yuri G. Matushkin
GeneNet database: description and modeling of gene networks. Silico Biol. 2 (2) (2002)
Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Res. 30 (1) (2002)
Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
Transcription Regulatory Regions Database (TRRD): its status in 2002. Nucleic Acids Res. 30 (1) (2002)
Nikolay A. Kolchanov, Elena A. Ananko, Vitali A. Likhoshvai, Olga A. Podkolodnaya, Elena V. Ignatieva, Alexander V. Ratushny, Yuri G. Matushkin
Gene Networks Description and Modeling in the GeneNet System. Gene Regulations and Metabolism (2002)
Evgenii E. Vityaev, Yuri L. Orlov, Oleg V. Vishnevsky, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov
Computer system "Gene Discovery" for promoter structure analysis. Silico Biol. 2 (3) (2002)
Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). Silico Biol. 2 (2) (2002)
Yuri L. Orlov, V. P. Filippov, Vladimir N. Potapov, Nikolay A. Kolchanov
Construction of stochastic context trees for genetical texts. German Conference on Bioinformatics (2001)
Nikolay A. Kolchanov, Charlie Hodgman
The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000. Bioinform. 17 (11) (2001)
Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis. Bioinform. 17 (11) (2001)
Yuri L. Orlov, Evgenii E. Vityaev, Oleg V. Vishnevsky, A. S. Belenok, Boris Kovalerchuk, Mikhail A. Pozdnyakov, Nikolay A. Kolchanov
Program "Gene Discovery" for Pattern Matching in Promoter Sequences. German Conference on Bioinformatics (2001)
Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny
Nucleosome formation potential of exons, introns, and Alu repeats. Bioinform. 17 (11) (2001)
Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov
Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. Bioinform. 17 (11) (2001)
Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Res. 29 (1) (2001)
Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, Alexander E. Kel
COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. Nucleic Acids Res. 28 (1) (2000)
Fedor A. Kolpakov, N. L. Podkolodnyi, Sergey V. Lavryushev, Dmitry A. Grigorovich, Mikhail P. Ponomarenko, Nikolay A. Kolchanov
Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress. Program. Comput. Softw. 26 (3) (2000)
Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov
SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. Nucleic Acids Res. 28 (1) (2000)
Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton
Transcription Regulatory Regions Database (TRRD): its status in 2000. Nucleic Acids Res. 28 (1) (2000)
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Olga A. Podkolodnaya, Denis G. Vorobiev, Nikolay A. Kolchanov, G. Christian Overton
Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. Bioinform. 15 (7) (1999)
Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, Fedor A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
Transcription Regulatory Regions Database (TRRD): its status in 1999. Nucleic Acids Res. 27 (1) (1999)
Julia V. Ponomarenko, Mikhail P. Ponomarenko, Anatoly S. Frolov, Denis G. Vorobiev, G. Christian Overton, Nikolay A. Kolchanov
Conformational and physicochemical DNA features specific for transcription factor binding sites. Bioinform. 15 (7) (1999)
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
Integrated databases and computer systems for studying eukaryotic gene expression. Bioinform. 15 (7) (1999)
Alexey V. Kochetov, Mikhail P. Ponomarenko, Anatoly S. Frolov, L. L. Kisselev, Nikolay A. Kolchanov
Prediction of eukaryotic mRNA translational properties. Bioinform. 15 (7) (1999)
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay L. Podkolodny, Ludmila K. Savinkova, Nikolay A. Kolchanov, G. Christian Overton
Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. Bioinform. 15 (7) (1999)
Victor G. Levitsky, Mikhail P. Ponomarenko, Julia V. Ponomarenko, Anatoly S. Frolov, Nikolay A. Kolchanov
Nucleosomal DNA property database. Bioinform. 15 (7) (1999)
Fedor A. Kolpakov, Elena A. Ananko, G. B. Kolesov, Nikolay A. Kolchanov
GeneNet: a gene network database and its automated visualization. Bioinform. 14 (6) (1998)
Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. ISMB (1998)
T. Heinemeyer, Edgar Wingender, Ingmar Reuter, Henning Hermjakob, Alexander E. Kel, Olga V. Kel-Margoulis, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Fedor A. Kolpakov, Nikolay L. Podkolodny, Nikolay A. Kolchanov
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 26 (1) (1998)
Alexander E. Kel, Olga V. Kel-Margoulis, Vladimir N. Babenko, Nikolay A. Kolchanov, Edgar Wingender
Combinatorial identification of promoters induced upon immune cell activation. German Conference on Bioinformatics (1998)
Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
Lipid Metabolism Transcription Regulatory Regions Database (LM-TRRD). German Conference on Bioinformatics (1997)
Mikhail P. Ponomarenko, Julia V. Ponomarenko, Alexander E. Kel, Nikolay A. Kolchanov, N. Karas, Edgar Wingender, Heinz Sklenar
Identification of the significant conformational features of functional sites in B-DNA. German Conference on Bioinformatics (1997)
Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov
Detecting direct correlations between positions in multiple alignments of amino acid sequences. German Conference on Bioinformatics (1997)
Edgar Wingender, Alexander E. Kel, Olga V. Kel-Margoulis, Holger Karas, T. Heinemeyer, P. Dietze, Rainer Knüppel, Aida G. Romashchenko, Nikolay A. Kolchanov
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. Nucleic Acids Res. 25 (1) (1997)
Mikhail P. Ponomarenko, A. N. Kolchanova, Nikolay A. Kolchanov
Generating Programs for Predicting the Activity of Functional Sites. J. Comput. Biol. 4 (1) (1997)
Alexander E. Kel, O. V. Kel, I. V. Ischenko, Nikolay A. Kolchanov, Holger Karas, Edgar Wingender, Heinz Sklenar
TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. German Conference on Bioinformatics (1996)
I. V. Ischenko, Alexey V. Kochetov, Alexander E. Kel, Nikolay A. Kolchanov, L. L. Kisselev
Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes. German Conference on Bioinformatics (1996)
Alexander E. Kel, M. Philipenko, Vladimir N. Babenko, Nikolay A. Kolchanov
Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential. German Conference on Bioinformatics (1996)
Yury V. Kondrakhin, Fedor A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes. German Conference on Bioinformatics (1996)
Elena A. Ananko, Elena V. Ignatieva, Alexander E. Kel, Nikolay A. Kolchanov
WWWTRRD: Hypertext Information System an Transcription Regulation. German Conference on Bioinformatics (1996)
Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov
Gene structure prediction using information on homologous protein sequence. Comput. Appl. Biosci. 12 (3) (1996)
Alexander E. Kel, O. V. Kel, Oleg V. Vishnevsky, Mikhail P. Ponomarenko, I. V. Ischenko, Holger Karas, Edgar Wingender, Nikolay A. Kolchanov, Heinz Sklenar
TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences. German Conference on Bioinformatics - Selected Papers (1996)
Yury V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi
Eukaryotic promoter recognition by binding sites for transcription factors. Comput. Appl. Biosci. 11 (5) (1995)
O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov
Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes. HICSS (5) (1995)
Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. ISMB (1995)
Alexander E. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov
Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences. ISMB (1995)
Yury V. Kondrakhin, V. V. Shamin, Nikolay A. Kolchanov
Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites. Comput. Appl. Biosci. 10 (6) (1994)
Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites. Comput. Appl. Biosci. 9 (6) (1993)
Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Comput. Appl. Biosci. 8 (6) (1992)