Dmitry A. Afonnikov

Publication Activity (10 Years)

Years Active: 1997-2017
Publications (10 Years): 2

Top Topics

Spatially Distributed

Environmental Conditions

Top Venues

J. Integr. Bioinform.

J. Bioinform. Comput. Biol.

Publications

Kirill E. Medvedev, Nikolay A. Kolchanov, Dmitry A. Afonnikov
Identification of residues of the archaeal RNA-binding Nip7 proteins specific to environmental conditions. J. Bioinform. Comput. Biol. 15 (2) (2017)
Zakhar S. Mustafin, Sergey A. Lashin, Yury G. Matushkin, Konstantin V. Gunbin, Dmitry A. Afonnikov
Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles. BMC Bioinform. 18 (S-1) (2017)
Konstantin V. Gunbin, Valentin V. Suslov, Mikhail A. Genaev, Dmitry A. Afonnikov
Computer System for Analysis of Molecular Evolution Modes (SAMEM): Analysis of molecular evolution modes at deep inner branches of the phylogenetic tree. Silico Biol. 11 (3-4) (2012)
Yuriy L. Orlov, Han Xu, Dmitry A. Afonnikov, Bing Lim, Jian-Chien Heng, Ping Yuan, Ming Chen, Junli Yan, Neil D. Clarke, Nina Orlova, Mikael Huss, Konstantin V. Gunbin, Nikolay Podkolodnyy, Huck-Hui Ng
Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell. J. Integr. Bioinform. 9 (2) (2012)
Yuri Vyatkin, Konstantin V. Gunbin, Alexey V. Snytnikov, Dmitry A. Afonnikov
The Location of the Gene Regions Under Selective Pressure: Plato Algorithm Parallelization. PaCT (2007)
Konstantin V. Gunbin, Dmitry A. Afonnikov, Nikolay A. Kolchanov
The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study. Silico Biol. 7 (3) (2007)
Dmitry A. Afonnikov, Nikolay A. Kolchanov
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro. Nucleic Acids Res. 30 (1) (2002)
Dmitry A. Afonnikov, Dmitry Yu. Oshchepkov, Nikolay A. Kolchanov
Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions. Bioinform. 17 (11) (2001)
Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov
Detecting direct correlations between positions in multiple alignments of amino acid sequences. German Conference on Bioinformatics (1997)