Ilya N. Shindyalov

Publication Activity (10 Years)

Years Active: 1992-2006
Publications (10 Years): 0

Publications

Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov
DMAPS: a database of multiple alignments for protein structures. Nucleic Acids Res. 34 (Database-Issue) (2006)
Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
CE-MC: a multiple protein structure alignment server. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne
A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE. J. Comput. Biol. 11 (5) (2004)
Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne
The Encyclopedia of Life Project: Grid Software and Deployment. New Gener. Comput. 22 (2) (2004)
Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
A case study of high-throughput biological data processing on parallel platforms. Bioinform. 20 (12) (2004)
Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing (2004)
Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR. PARCO (2003)
Nickolai Alexandrov, Ilya N. Shindyalov
PDP: protein domain parser. Bioinform. 19 (3) (2003)
Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov
Building an automated classification of DNA-binding protein domains. ECCB (2002)
Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase. Nucleic Acids Res. 30 (1) (2002)
Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization. Pacific Symposium on Biocomputing (2001)
Ilya N. Shindyalov, Philip E. Bourne
A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm. Nucleic Acids Res. 29 (1) (2001)
Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, Philip E. Bourne
CKAAPs DB: a conserved key amino acid positions database. Nucleic Acids Res. 29 (1) (2001)
Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne
The Protein Data Bank. Nucleic Acids Res. 28 (1) (2000)
Ilya N. Shindyalov, Philip E. Bourne
Protein data representation and query using optimized data decomposition. Comput. Appl. Biosci. 13 (5) (1997)
Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. ISMB (1995)
Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne
Design and use of a software framework to obtain information derived from macromolecular structure data. HICSS (5) (1995)
Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
Design and Application of a C++ Macromolecular Class Library. ISMB (1994)
Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
Design and application of PDBlib, a C++ macromolecular class library. Comput. Appl. Biosci. 10 (6) (1994)
Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices. Comput. Appl. Biosci. 8 (6) (1992)