David L. Wild

Publication Activity (10 Years)

Years Active: 1999-2020
Publications (10 Years): 4

Top Topics

Gene Regulatory Networks

Cluster Analysis

Transcription Factor Binding Sites

Bayesian Inference

Top Venues

Comput. Phys. Commun.

Adv. Data Anal. Classif.

Publications

Nathan Cunningham, Jim E. Griffin, David L. Wild
ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification. Adv. Data Anal. Classif. 14 (2) (2020)
Krzysztof Polanski, Bo Gao, Sam A. Mason, Paul Brown, Sascha Ott, Katherine J. Denby, David L. Wild
Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinform. 34 (5) (2018)
Nikolas S. Burkoff, Robert J. N. Baldock, Csilla Várnai, David L. Wild, Gábor Csányi
Exploiting molecular dynamics in Nested Sampling simulations of small peptides. Comput. Phys. Commun. 201 (2016)
Christopher A. Penfold, Jonathan B. A. Millar, David L. Wild
Inferring orthologous gene regulatory networks using interspecies data fusion. Bioinform. 31 (12) (2015)
Nikolas S. Burkoff, Csilla Várnai, David L. Wild
Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure. Bioinform. 29 (5) (2013)
Paul D. W. Kirk, Jim E. Griffin, Richard S. Savage, Zoubin Ghahramani, David L. Wild
Bayesian correlated clustering to integrate multiple datasets. Bioinform. 28 (24) (2012)
Christopher A. Penfold, Vicky Buchanan-Wollaston, Katherine J. Denby, David L. Wild
Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinform. 28 (12) (2012)
Emma J. Cooke, Richard S. Savage, Paul D. W. Kirk, Robert Darkins, David L. Wild
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinform. 12 (2011)
Oliver Stegle, Katherine J. Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. J. Comput. Biol. 17 (3) (2010)
Richard S. Savage, Zoubin Ghahramani, Jim E. Griffin, Bernard J. de la Cruz, David L. Wild
Discovering transcriptional modules by Bayesian data integration. Bioinform. 26 (12) (2010)
Richard S. Savage, Katherine A. Heller, Yang Xu, Zoubin Ghahramani, William M. Truman, Murray Grant, Katherine J. Denby, David L. Wild
R/BHC: fast Bayesian hierarchical clustering for microarray data. BMC Bioinform. 10 (2009)
Carl Edward Rasmussen, Bernard J. de la Cruz, Zoubin Ghahramani, David L. Wild
Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. RECOMB (2009)
Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. GCB (2009)
Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. J. Integr. Bioinform. 6 (1) (2009)
Alexei A. Podtelezhnikov, David L. Wild
CRANKITE: A fast polypeptide backbone conformation sampler. Source Code Biol. Medicine 3 (2008)
Wei Chu, Zoubin Ghahramani, Roland Krause, David L. Wild
Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model. Pacific Symposium on Biocomputing (2006)
Wei Chu, Zoubin Ghahramani, Alexei A. Podtelezhnikov, David L. Wild
Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (2) (2006)
Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinform. 21 (3) (2005)
Wei Chu, Zoubin Ghahramani, Francesco Falciani, David L. Wild
Biomarker discovery in microarray gene expression data with Gaussian processes. Bioinform. 21 (16) (2005)
Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi, Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani
Modeling T-cell activation using gene expression profiling and state-space models. Bioinform. 20 (9) (2004)
Wei Chu, Zoubin Ghahramani, David L. Wild
Protein secondary structure prediction using sigmoid belief networks to parameterize segmental semi-Markov models. ESANN (2004)
Wei Chu, Zoubin Ghahramani, David L. Wild
A graphical model for protein secondary structure prediction. ICML (2004)
Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing (2004)
Ananya Dubey, Seungwoo Hwang, Claudia Rangel, Carl Edward Rasmussen, Zoubin Ghahramani, David L. Wild
Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models. Pacific Symposium on Biocomputing (2004)
Alpan Raval, Zoubin Ghahramani, David L. Wild
A Bayesian network model for protein fold and remote homologue recognition. Bioinform. 18 (6) (2002)
Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn
Protein analyst - a distributed object environment for protein sequence and structure analysis. Bioinform. 15 (6) (1999)