Oliver Stegle

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 8

Top Topics

Matrix Factorisation

Grand Challenges

Top Venues

Pacific Symposium on Biocomputing

Nucleic Acids Res.

Publications

Martin Rohbeck, Brian Clarke, Katharina Mikulik, Alexandra Pettet, Oliver Stegle, Kai Ueltzhöffer
Bicycle: Intervention-Based Causal Discovery with Cycles. CLeaR (2024)
Florin C. Walter, Oliver Stegle, Britta Velten
FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution. Bioinform. 39 (5) (2023)
Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks
Genomic basis for RNA alterations in cancer. Nat. 578 (7793) (2020)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa L. Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew F. Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46 (Database-Issue) (2018)
Gautier Koscielny, Peter An, Denise Carvalho-Silva, Jennifer A. Cham, Luca Fumis, Rippa Gasparyan, Samiul Hasan, Nikiforos Karamanis, Michael Maguire, Eliseo Papa, Andrea Pierleoni, Miguel Pignatelli, Theo Platt, Francis Rowland, Priyanka Wankar, A. Patrícia Bento, Tony Burdett, Antonio Fabregat, Simon A. Forbes, Anna Gaulton, Cristina Yenyxe González, Henning Hermjakob, Anne Hersey, Steven Jupe, Senay Kafkas, Maria Keays, Catherine Leroy, Francisco-Javier Lopez, María P. Magariños, James Malone, Johanna R. McEntyre, Alfonso Muñoz-Pomer Fuentes, Claire O'Donovan, Irene Papatheodorou, Helen E. Parkinson, Barbara Palka, Justin E. Paschall, Robert Petryszak, Naruemon Pratanwanich, Sirarat Sarntivijai, Gary Saunders, Konstantinos Sidiropoulos, Thomas Smith, Zbyslaw Sondka, Oliver Stegle, Y. Amy Tang, Edward Turner, Brendan W. Vaughan, Olga Vrousgou, Xavier Watkins, Maria Jesus Martin, Philippe Sanseau, Jessica Vamathevan, Ewan Birney, Jeffrey Barrett, Ian Dunham
Open Targets: a platform for therapeutic target identification and validation. Nucleic Acids Res. 45 (Database-Issue) (2017)
Daniel L. Greenfield, Oliver Stegle, Alban Rrustemi
GeneCodeq: quality score compression and improved genotyping using a Bayesian framework. Bioinform. 32 (20) (2016)
Naruemon Pratanwanich, Pietro Liò, Oliver Stegle
Warped Matrix Factorisation for Multi-view Data Integration. ECML/PKDD (2) (2016)
Joel T. Dudley, Jennifer Listgarten, Oliver Stegle, Steven E. Brenner, Leopold Parts
Session introduction. Pacific Symposium on Biocomputing (2015)
Kjong-Van Lehmann, André Kahles, Cyriac Kandoth, William Lee, Nikolaus Schultz, Oliver Stegle, Gunnar Rätsch
Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. Pacific Symposium on Biocomputing (2015)
Jennifer Listgarten, Oliver Stegle, Quaid Morris, Steven E. Brenner, Leopold Parts
Session introduction. Pacific Symposium on Biocomputing (2014)
Barbara Rakitsch, Christoph Lippert, Oliver Stegle, Karsten M. Borgwardt
A Lasso multi-marker mixed model for association mapping with population structure correction. Bioinform. 29 (2) (2013)
Oliver Stegle, Steven E. Brenner, Quaid Morris, Jennifer Listgarten
Session introduction. Pacific Symposium on Biocomputing (2013)
Nicoló Fusi, Christoph Lippert, Karsten M. Borgwardt, Neil D. Lawrence, Oliver Stegle
Detecting regulatory gene-environment interactions with unmeasured environmental factors. Bioinform. 29 (11) (2013)
Quaid Morris, Steven E. Brenner, Jennifer Listgarten, Oliver Stegle
The Future of Genome-Based Medicine. Pacific Symposium on Biocomputing (2013)
Barbara Rakitsch, Christoph Lippert, Karsten M. Borgwardt, Oliver Stegle
It is all in the noise: Efficient multi-task Gaussian process inference with structured residuals. NIPS (2013)
Dominik G. Grimm, Bastian Greshake, Stefan Kleeberger, Christoph Lippert, Oliver Stegle, Bernhard Schölkopf, Detlef Weigel, Karsten M. Borgwardt
easyGWAS: An integrated interspecies platform for performing genome-wide association studies CoRR (2012)
Theofanis Karaletsos, Oliver Stegle, Christine Dreyer, John M. Winn, Karsten M. Borgwardt
ShapePheno: unsupervised extraction of shape phenotypes from biological image collections. Bioinform. 28 (7) (2012)
Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten
Session introduction. Pacific Symposium on Biocomputing (2012)
Dominik Janzing, Eleni Sgouritsa, Oliver Stegle, Jonas Peters, Bernhard Schölkopf
Detecting low-complexity unobserved causes CoRR (2012)
Nicoló Fusi, Oliver Stegle, Neil D. Lawrence
Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies. PLoS Comput. Biol. 8 (1) (2012)
Oliver Stegle, Christoph Lippert, Joris M. Mooij, Neil D. Lawrence, Karsten M. Borgwardt
Efficient inference in matrix-variate Gaussian models with \iid observation noise. NIPS (2011)
Karin Klotzbücher, Yasushi Kobayashi, Nino Shervashidze, Oliver Stegle, Bertram Müller-Myhsok, Detlef Weigel, Karsten M. Borgwardt
Efficient branch-and-bound techniques for two-locus association mapping. BMC Bioinform. 12 (S-11) (2011)
Dominik Janzing, Eleni Sgouritsa, Oliver Stegle, Jonas Peters, Bernhard Schölkopf
Detecting low-complexity unobserved causes. UAI (2011)
Oliver Stegle, Katherine J. Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. J. Comput. Biol. 17 (3) (2010)
Oliver Stegle, Leopold Parts, Richard Durbin, John M. Winn
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. PLoS Comput. Biol. 6 (5) (2010)
Joris M. Mooij, Oliver Stegle, Dominik Janzing, Kun Zhang, Bernhard Schölkopf
Probabilistic latent variable models for distinguishing between cause and effect. NIPS (2010)
Christoph Lippert, Oliver Stegle, Zoubin Ghahramani, Karsten M. Borgwardt
A kernel method for unsupervised structured network inference. AISTATS (2009)
Oliver Stegle, Linda Payet, Jean-Louis Mergny, David J. C. MacKay, Julian Leon Huppert
Predicting and understanding the stability of G-quadruplexes. Bioinform. 25 (12) (2009)
Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. RECOMB (2009)
Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. GCB (2009)
Oliver Stegle, Anitha Kannan, Richard Durbin, John M. Winn
Accounting for Non-genetic Factors Improves the Power of eQTL Studies. RECOMB (2008)
Oliver Stegle, Sebastian V. Fallert, David J. C. MacKay, Søren Brage
Gaussian Process Robust Regression for Noisy Heart Rate Data. IEEE Trans. Biomed. Eng. 55 (9) (2008)
Ryan Prescott Adams, Oliver Stegle
Gaussian process product models for nonparametric nonstationarity. ICML (2008)