Johannes Köster

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 14

Top Topics

Redescription Mining

Labeling Process

Graph Construction

Top Venues

Publications

Hamdiye Uzuner, Annette Paschen, Dirk Schadendorf, Johannes Köster
Orthanq: transparent and uncertainty-aware haplotype quantification with application in HLA-typing. BMC Bioinform. 25 (1) (2024)
Till Hartmann, Christopher Schröder, Elias Kuthe, David Laehnemann, Johannes Köster
Insane in the vembrane: filtering and transforming VCF/BCF files. Bioinform. 39 (1) (2023)
Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments. BMC Bioinform. 22 (1) (2021)
Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Sustainable data analysis with Snakemake. F1000Research 10 (2021)
Jasmijn A. Baaijens, Bastiaan Van der Roest, Johannes Köster, Leen Stougie, Alexander Schönhuth
Full-length de novo viral quasispecies assembly through variation graph construction. Bioinform. 35 (24) (2019)
Bianca K. Stöcker, Till Schäfer, Petra Mutzel, Johannes Köster, Nils M. Kriege, Sven Rahmann
Protein Complex Similarity Based on Weisfeiler-Lehman Labeling. SISAP (2019)
Johannes Köster, Myles Brown, Xiaole Shirley Liu
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35 (13) (2019)
Johannes Köster, Myles Brown, Xiaole Shirley Liu
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35 (6) (2019)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Johannes Köster, Sven Rahmann
Snakemake - a scalable bioinformatics workflow engine. Bioinform. 34 (20) (2018)
MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes Köster, Bo Li, Hanfei Sun, Taiwen Li, Jian Zhang, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, Xiaole Shirley Liu, Henry W. Long
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. BMC Bioinform. 19 (1) (2018)
Bianca K. Stöcker, Johannes Köster, Sven Rahmann
SimLoRD: Simulation of Long Read Data. Bioinform. 32 (17) (2016)
Johannes Köster
Rust-Bio: a fast and safe bioinformatics library. Bioinform. 32 (3) (2016)
Jian Ma, Johannes Köster, Qian Qin, Shengen Hu, Wei Li, Chenhao Chen, Qingyi Cao, Jinzeng Wang, Shenglin Mei, Qi Liu, Han Xu, Xiaole Shirley Liu
CRISPR-DO for genome-wide CRISPR design and optimization. Bioinform. 32 (21) (2016)
Johannes Köster
Rust-Bio - a fast and safe bioinformatics library. CoRR (2015)
Johannes Köster, Sven Rahmann
Massively parallel read mapping on GPUs with PEANUT. CoRR (2014)
Johannes Köster, Sven Rahmann
Snakemake - a scalable bioinformatics workflow engine. Bioinform. 28 (19) (2012)
Johannes Köster, Sven Rahmann
Building and Documenting Workflows with Python-Based Snakemake. GCB (2012)