Manuel Holtgrewe

ORCID

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 9

Top Venues

Bioinform.

J. Open Source Softw.

BMC Bioinform.

Nucleic Acids Res.

Free University of Berlin (PHD)

Education History

Free University of Berlin

PHD

Publications

Vinzenz May, Leonard Koch, Björn Fischer-Zirnsak, Denise Horn, Petra Gehle, Uwe Kornak, Dieter Beule, Manuel Holtgrewe
ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise. Bioinform. 38 (16) (2022)
Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Sustainable data analysis with Snakemake. F1000Research 10 (2021)
Mikko Nieminen, Oliver Stolpe, Franziska Schumann, Manuel Holtgrewe, Dieter Beule
SODAR Core: a Django-based framework for scientific data management and analysis web apps. J. Open Source Softw. 5 (55) (2020)
Manuel Holtgrewe, Oliver Stolpe, Mikko Nieminen, Stefan Mundlos, Alexej Knaus, Uwe Kornak, Dominik Seelow, Lara Segebrecht, Malte Spielmann, Björn Fischer-Zirnsak, Felix Boschann, Ute Scholl, Nadja Ehmke, Dieter Beule
VarFish: comprehensive DNA variant analysis for diagnostics and research. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Manuel Holtgrewe, Clemens Messerschmidt, Mikko Nieminen, Dieter Beule
DigestiFlow: from BCL to FASTQ with ease. Bioinform. 36 (6) (2020)
Mathias Kuhring, Mikko Nieminen, Jennifer Kirwan, Dieter Beule, Manuel Holtgrewe
AltamISA: a Python API for ISA-Tab files. J. Open Source Softw. 4 (40) (2019)
Clemens Messerschmidt, Manuel Holtgrewe, Dieter Beule
HLA-MA: simple yet powerful matching of samples using HLA typing results. Bioinform. 33 (14) (2017)
Manuel Holtgrewe, Dieter Beule
VCFPy: a Python 3 library with good support for both reading and writing VCF. J. Open Source Softw. 1 (6) (2016)
Manuel Holtgrewe, Léon Kuchenbecker, Knut Reinert
Methods for the detection and assembly of novel sequence in high-throughput sequencing data. Bioinform. 31 (12) (2015)
Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard
Fiona: a parallel and automatic strategy for read error correction. Bioinform. 30 (17) (2014)
Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert
Genome alignment with graph data structures: a comparison. BMC Bioinform. 15 (2014)
David Weese, Manuel Holtgrewe, Knut Reinert
RazerS 3: Faster, fully sensitive read mapping. Bioinform. 28 (20) (2012)
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping. BMC Bioinform. 12 (2011)
Manuel Holtgrewe, Peter Sanders, Christian Schulz
Engineering a scalable high quality graph partitioner. IPDPS (2010)
Marcel Birn, Manuel Holtgrewe, Peter Sanders, Johannes Singler
Simple and Fast Nearest Neighbor Search. ALENEX (2010)
Manuel Holtgrewe, Peter Sanders, Christian Schulz
Engineering a Scalable High Quality Graph Partitioner CoRR (2009)

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Publication Activity (10 Years)

Top Topics

Top Venues

Manuel Holtgrewe