Yingbo Cui

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 16

Top Topics

Weakly Supervised

Massively Parallel

Top Venues

Publications

Tao Tang, Kai Lu, Lin Peng, Yingbo Cui, Jianbin Fang, Chun Huang, Ruibo Wang, Canqun Yang, Yifei Guo
SNCL: a supernode OpenCL implementation for hybrid computing arrays. J. Supercomput. 80 (7) (2024)
Yufei Guo, Xinjie An, Shijie Li, Yingbo Cui, Peng Zhang, Biao Long, Shanshan Li
MTMap: A Long-Read Alignment Tool based on Multi-Core DSPs. BIBM (2023)
Yanlong Qiu, Siqi Wang, Xi Yang, Xinyuan Qiu, Chengkun Wu, Yingbo Cui, Canqun Yang
DrugProtKGE: Weakly Supervised Knowledge Graph Embedding for Highly-Effective Drug-Protein Interaction Representation. BIBM (2023)
Kun Ran, Yingbo Cui, Zihang Wang, Shaoliang Peng
Performance Evaluation of Spark, Ray and MPI: A Case Study on Long Read Alignment Algorithm. ICA3PP (3) (2023)
Weiming Xiang, Yingbo Cui, Yaning Yang, Ang Zhang, Boya Ji, Shaoliang Peng
MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing. BIBM (2022)
Zihang Wang, Yingbo Cui, Shaoliang Peng, Xiangke Liao, Yangbo Yu
MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data. Comput. Biol. Chem. 99 (2022)
Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments. BMC Bioinform. 22 (1) (2021)
Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu, Yuan Gao, Tyson Dawson, Lumen Chao, Wubing Zhang, Dian Li, Zexiang Zeng, Jijun Yu, Zexu Li, Teng Fei, Shaoliang Peng, Wei Li
CRISP-view: a database of functional genetic screens spanning multiple phenotypes. Nucleic Acids Res. 49 (Database-Issue) (2021)
Zeyu Xia, Yingbo Cui, Ang Zhang, Peng Zhang, Sifan Long, Tao Tang, Lin Peng, Chun Huang, Canqun Yang, Xiangke Liao
Large-Scale Parallel Alignment Algorithm for SMRT Reads. ICA3PP (2) (2021)
Weiming Xiang, Dong Chen, Yingbo Cui, Shaoliang Peng
H-VAE: A Hybrid Variational AutoEncoder with Data Augmentation in Predicting CRISPR/Cas9 Off-target. BIBM (2021)
Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao
A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (2) (2019)
Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi
Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture. BMC Bioinform. (9) (2018)
Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao
mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection. IEEE Trans. Parallel Distributed Syst. 29 (11) (2018)
Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen
Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer. Supercomput. Front. Innov. 2 (1) (2015)
Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang
The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer. CCGRID (2015)
Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu
Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2. ISC (2015)
Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng
mBWA: A Massively Parallel Sequence Reads Aligner. PACBB (2014)