Chengkun Wu

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 44

Top Topics

Multivariate Time Series

Anomaly Detection

Molecular Dynamics

Relational Graph

Top Venues

Briefings Bioinform.

Publications

Yishui Li, Wei Wang, Jie Liu, Chengkun Wu
Pre-training molecular representation model with spatial geometry for property prediction. Comput. Biol. Chem. 109 (2024)
Jun Zhan, Chengkun Wu, Canqun Yang, Qiucheng Miao, Xiandong Ma
HFN: Heterogeneous feature network for multivariate time series anomaly detection. Inf. Sci. 670 (2024)
Yanlong Qiu, Siqi Wang, Xi Yang, Xinyuan Qiu, Chengkun Wu, Yingbo Cui, Canqun Yang
DrugProtKGE: Weakly Supervised Knowledge Graph Embedding for Highly-Effective Drug-Protein Interaction Representation. BIBM (2023)
Jing-Lun Ma, Yanlong Qiu, Canqun Yang, Chengkun Wu
BioNet+: A Comprehensive Interaction Model of Finding Therapeutics for Diseases with Graph Deep Learning. HPCC/DSS/SmartCity/DependSys (2023)
Leyun Wu, Guangpu Wang, Liping Zhou, Mengxia Mo, Yulong Shi, Bo Li, Leimiao Yin, Qiang Zhao, Yongqing Yang, Chengkun Wu, Zhijian Xu, Weiliang Zhu
Molecular dynamics study on the behavior and binding mechanism of target protein Transgelin-2 with its agonist TSG12 for anti-asthma drug discovery. Comput. Biol. Medicine 153 (2023)
Yishui Li, Runduo Liu, Jie Liu, Haibin Luo, Chengkun Wu, Zhe Li
An Open Source Graph-Based Weighted Cycle Closure Method for Relative Binding Free Energy Calculations. J. Chem. Inf. Model. 63 (2) (2023)
Zhe Li, Chengkun Wu, Yishui Li, Runduo Liu, Kai Lu, Ruibo Wang, Jie Liu, Chunye Gong, Canqun Yang, Xin Wang, Chang-Guo Zhan, Hai-Bin Luo
Free energy perturbation-based large-scale virtual screening for effective drug discovery against COVID-19. Int. J. High Perform. Comput. Appl. 37 (1) (2023)
Lihuan Yuan, Chengkun Wu, Xiaowei Guo, Canqun Yang
ParaCopasi: A package for parallel biochemical simulation and analysis. J. Comput. Chem. 43 (2) (2022)
Xi Yang, Wei Wang, Jing-Lun Ma, Yan-Long Qiu, Kai Lu, Dong-Sheng Cao, Chengkun Wu
BioNet: a large-scale and heterogeneous biological network model for interaction prediction with graph convolution. Briefings Bioinform. 23 (1) (2022)
Jun Zhan, Siqi Wang, Xiandong Ma, Chengkun Wu, Canqun Yang, Detian Zeng, Shilin Wang
Stgat-Mad : Spatial-Temporal Graph Attention Network For Multivariate Time Series Anomaly Detection. ICASSP (2022)
Yan-Long Qiu, Wei Wang, Chengkun Wu, Zhichang Zhang
A risk factor attention-based model for cardiovascular disease prediction. BMC Bioinform. (8) (2022)
Guang Yu, Siqi Wang, Zhiping Cai, Xinwang Liu, Chuanfu Xu, Chengkun Wu
Deep Anomaly Discovery from Unlabeled Videos via Normality Advantage and Self-Paced Refinement. CVPR (2022)
Qiucheng Miao, Chuanfu Xu, Jun Zhan, Dong Zhu, Chengkun Wu
An Unsupervised Short- and Long-Term Mask Representation for Multivariate Time Series Anomaly Detection. ICONIP (6) (2022)
Guang Yu, Siqi Wang, Zhiping Cai, Xinwang Liu, Chengkun Wu
Effective Video Abnormal Event Detection by Learning A Consistency-Aware High-Level Feature Extractor. ACM Multimedia (2022)
Liping Zhou, Tingting Liu, Mengxia Mo, Yulong Shi, Leyun Wu, Yishui Li, Qiuping Qin, Weiliang Zhu, Chengkun Wu, Likun Gong, Zhijian Xu
Exploring the Binding Affinity and Mechanism between ACE2 and the Trimers of Delta and Omicron Spike Proteins by Molecular Dynamics Simulation and Bioassay. J. Chem. Inf. Model. 62 (18) (2022)
Qiucheng Miao, Chuanfu Xu, Jun Zhan, Dong Zhu, Chengkun Wu
An Unsupervised Short- and Long-Term Mask Representation for Multivariate Time Series Anomaly Detection. CoRR (2022)
Jia-Cai Yi, Chengkun Wu, Xiao-Chen Zhang, Xinyi Xiao, Yanlong Qiu, Wentao Zhao, Tingjun Hou, Dong-Sheng Cao
MICER: a pre-trained encoder-decoder architecture for molecular image captioning. Bioinform. 38 (19) (2022)
Xiao-Chen Zhang, Jia-Cai Yi, Guo-Ping Yang, Chengkun Wu, Tingjun Hou, Dong-Sheng Cao
ABC-Net: a divide-and-conquer based deep learning architecture for SMILES recognition from molecular images. Briefings Bioinform. 23 (2) (2022)
Jun Zhan, Chengkun Wu, Canqun Yang, Qiucheng Miao, Xiandong Ma
HFN: Heterogeneous Feature Network for Multivariate Time Series Anomaly Detection. CoRR (2022)
Guo-Li Xiong, Zhi-Jiang Yang, Jia-Cai Yi, Ningning Wang, Lei Wang, Huimin Zhu, Chengkun Wu, Ai-Ping Lu, Xiang Chen, Shao Liu, Tingjun Hou, Dongsheng Cao
DDInter: an online drug-drug interaction database towards improving clinical decision-making and patient safety. Nucleic Acids Res. 50 (D1) (2022)
Zongren Li, Qin Zhong, Jing Yang, Yongjie Duan, Wenjun Wang, Chengkun Wu, Kunlun He
DeepKG: an end-to-end deep learning-based workflow for biomedical knowledge graph extraction, optimization and applications. Bioinform. 38 (5) (2022)
Dong Zhu, Chengkun Wu, Chuanfu Xu, Zhenghua Wang
AA-LSTM: An Adversarial Autoencoder Joint Model for Prediction of Equipment Remaining Useful Life. PAKDD (1) (2021)
Guo-Li Xiong, Zhenxing Wu, Jia-Cai Yi, Li Fu, Zhi-Jiang Yang, Chang-Yu Hsieh, Mingzhu Yin, Xiangxiang Zeng, Chengkun Wu, Ai-Ping Lu, Xiang Chen, Tingjun Hou, Dong-Sheng Cao
ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Chengkun Wu, Xinyi Xiao, Canqun Yang, Jinxiang Chen, Jiacai Yi, Yanlong Qiu
Mining microbe-disease interactions from literature via a transfer learning model. BMC Bioinform. 22 (1) (2021)
Chengkun Wu, Xiao-Chen Zhang, Zhi-Jiang Yang, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao
Learning to SMILES: BAN-based strategies to improve latent representation learning from molecules. Briefings Bioinform. 22 (6) (2021)
Xurui Ma, Xiang Zhang, Chengkun Wu, Chuanfu Xu, Jie Liu, Zhigang Luo
Joint motion context and clip augmentation for spatio-temporal action detection. ICMV (2021)
Xi Yang, Chengkun Wu, Goran Nenadic, Wei Wang, Kai Lu
Mining a stroke knowledge graph from literature. BMC Bioinform. (10) (2021)
Xi Yang, Chengkun Wu, Goran Nenadic, Wei Wang, Kai Lu
Correction to: Mining a stroke knowledge graph from literature. BMC Bioinform. 22 (1) (2021)
Chengkun Wu, Wei Wang, Xi Yang, Canqun Yang
Drug-drug interaction extraction from biomedical texts based on multi-attention mechanism. ICBRA (2021)
Kaifan Hu, Chengkun Wu, En Zhu
Efficient Distributed Stochastic Gradient Descent Through Gaussian Averaging. ICAIS (1) (2021)
Xiao-Chen Zhang, Chengkun Wu, Zhi-Jiang Yang, Zhen-Xing Wu, Jia-Cai Yi, Chang-Yu Hsieh, Tingjun Hou, Dong-Sheng Cao
MG-BERT: leveraging unsupervised atomic representation learning for molecular property prediction. Briefings Bioinform. 22 (6) (2021)
Wei Wang, Xi Yang, Chengkun Wu, Canqun Yang
CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph. BMC Bioinform. 21 (1) (2020)
Anyao Tang, Chengkun Wu, Jie Liu, Wei Wang, Xi Yang, Yuting Xing
Parallel Computing for Large-Scale Author Name Disambiguation in MEDLINE. HPCC/SmartCity/DSS (2019)
Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao
mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection. IEEE Trans. Parallel Distributed Syst. 29 (11) (2018)
Xi Yang, Zhuo Song, Chengkun Wu, Wei Wang, Gen Li, Wei Zhang, Lingqian Wu, Kai Lu
Constructing a database for the relations between CNV and human genetic diseases via systematic text mining. BMC Bioinform. (19) (2018)
Xiang Zhang, Guohua Dong, Yimo Du, Chengkun Wu, Zhigang Luo, Canqun Yang
Collaborative Subspace Graph Hashing for Cross-modal Retrieval. ICMR (2018)
Yuewei Ming, Yawei Zhao, Chengkun Wu, Kuan Li, Jianping Yin
Distributed and asynchronous Stochastic Gradient Descent with variance reduction. Neurocomputing 281 (2018)
Yuting Xing, Gen Li, Zhenguo Wang, Bolun Feng, Zhuo Song, Chengkun Wu
GTZ: a fast compression and cloud transmission tool optimized for FASTQ files. BMC Bioinform. 18 (16) (2017)
Xi Yang, Jianbin Fang, Jing Chen, Chengkun Wu, Tao Tang, Kai Lu
High Performance Coordinate Descent Matrix Factorization for Recommender Systems. Conf. Computing Frontiers (2017)
Erxue Min, Yawei Zhao, Jun Long, Chengkun Wu, Kuan Li, Jianping Yin
SVRG with adaptive epoch size. IJCNN (2017)
Shaoliang Peng, Shunyun Yang, Ming Gao, Xiangke Liao, Jie Liu, Canqun Yang, Chengkun Wu, Wenqiang Yu
P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool. BMC Genom. 18 (S2) (2017)
Wei Wang, Xi Yang, Canqun Yang, Xiaowei Guo, Xiang Zhang, Chengkun Wu
Dependency-based long short term memory network for drug-drug interaction extraction. BMC Bioinform. 18 (16) (2017)
Qing Liao, Naiyang Guan, Chengkun Wu, Qian Zhang
Predicting Unknown Interactions Between Known Drugs and Targets via Matrix Completion. PAKDD (1) (2016)
Lili Zhao, Kuan Li, Mao Wang, Jianping Yin, En Zhu, Chengkun Wu, Siqi Wang, Chengzhang Zhu
Automatic cytoplasm and nuclei segmentation for color cervical smear image using an efficient gap-search MRF. Comput. Biol. Medicine 71 (2016)
Ettore Murabito, Riccardo Colombo, Chengkun Wu, Malkhey Verma, Samrina Rehman, Jacky L. Snoep, Shaoliang Peng, Naiyang Guan, Xiangke Liao, Hans V. Westerhoff
SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. Quant. Biol. 3 (1) (2015)
Xin Liu, Shaoliang Peng, Canqun Yang, Chengkun Wu, Haiqiang Wang, Qian Cheng, Weiliang Zhu, Jinan Wang
mAMBER: Accelerating Explicit Solvent Molecular Dynamic with Intel Xeon Phi Many-Integrated Core Coprocessors. CCGRID (2015)
Haiqiang Wang, Shaoliang Peng, Xiaoqian Zhu, Chengkun Wu, Xin Liu, Qian Chen, Weiliang Zhu, Jinan Wang, Huaiyu Yang
A Method to Accelerate GROMACS in Offload Mode on Tianhe-2 Supercomputer. CCGRID (2015)
Heng Wang, Shaoliang Peng, Yutong Lu, Chengkun Wu, Jiajun Wen, Jie Liu, Xiaoqian Zhu
BWTCP: A Parallel Method for Constructing BWT in Large Collection of Genomic Reads. ISC (2015)
Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen
Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer. Supercomput. Front. Innov. 2 (1) (2015)
Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang
The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer. CCGRID (2015)
Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu
Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2. ISC (2015)
Mengyi Sun, Bingyu Yan, Chengkun Wu, Xiaole Shirley Liu
Meeting report on YBPW 2014 (the 3rd Young Bioinformatics PIs Workshop). Quant. Biol. 2 (2) (2014)
Chengkun Wu, Jean-Marc Schwartz, Goran Nenadic
PathNER: a tool for systematic identification of biological pathway mentions in the literature. BMC Syst. Biol. 7 (S-3) (2013)
Yingjie Xia, Chengkun Wu, Qing-Jie Kong, Zhenyu Shan, Li Kuang
A Parallel Fusion Method for Heterogeneous Multi-sensor Transportation Data. MDAI (2011)
Jieren Cheng, Jianping Yin, Yun Liu, Zhiping Cai, Chengkun Wu
Detecting Distributed Denial of Service Attack Based on Multi-feature Fusion. FGIT-SecTech (2009)
Chengkun Wu, Jianping Yin, Zhiping Cai, En Zhu, Jieren Cheng
An Efficient Pre-filtering Mechanism for Parallel Intrusion Detection Based on Many-Core GPU. FGIT-SecTech (2009)
Chengkun Wu, Jianping Yin, Zhiping Cai, En Zhu, Jieren Cheng
A Hybrid Parallel Signature Matching Model for Network Security Applications Using SIMD GPU. APPT (2009)
Jieren Cheng, Jianping Yin, Yun Liu, Zhiping Cai, Chengkun Wu
DDoS Attack Detection Using IP Address Feature Interaction. INCoS (2009)
Jieren Cheng, Jianping Yin, Chengkun Wu, Boyun Zhang, Yun Liu
DDoS Attack Detection Method Based on Linear Prediction Model. ICIC (1) (2009)